RNA id: AMCG00019686


Basic Information

Item Value
RNA id AMCG00019686
length 3405
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00019686
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37458093 ~ 37489142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTCCCCAAAATGGTGCCTGATCTCTTGTATCACCGTCTTCACAGGCCACATGCTGCTTTGCTTGTCCTCCACGTGGCTCTCCAAGATCCCTTCCCCTGAGCACCCTGGGCTCTTCTCTCTCCGTGTCCATAAAGCGATCACTTTTGAAGAAGGGGGCCACACTTACCTTGATTCCTTCCAACCTCCCTGTCGTGTCAGCTACTTCCTGAGCTCATTGGGCAGCTACAGCACCCAAGCCCAGGATAAAGAGGGACCATGCCTGGACAGCAAACTGGAGGCAGATTTGGACTGTCCAGCCTGTGGCTCTCCACAGCTCAGCCGGATCACTGAAAACATGCTACTGACTCGCCAGCTGCTGTCCCAGAAAGGGGTGGGCATACCCCAAACCCTGGCCTTCATCTTCCACCCTCTCCCCACATCCTGGCCCCCACACCCCAGCATAACAGTAGTTTCAGTCCAGTTGAAAGAACAACTGCAAGAGCTTATGCCTGGAGCCATCGACACATTTCTTCAACATCCAGAATTACAGAGCTGCCATGAAGTTATCGTTCAGCCTTCTGGTGGGGGCTGGTATTCCTGTGATAACGAGACGACCCTTGTGAAGAGGGACAGGGAAGGAGTCCTCAGTGCCACACTAGCTCTCCTGCCCAGGATCCAGGAAGGAGAGTCCATTCTCATCTCAGCATCTTATGAATCGGTCCAGCCTCAGAAACCACTGAAGCTGGAACAGAGCGTAGCTTTTAAAGGACAAGGAGTAAATAGTACTACTAACATAATATTACTACTTACAGTGCTCTGTTGTTGTGTTCAGGTGGTGTGCTGGGTGGATAAGGCGGAGGCTCCAGCCAGTGCAAGGTCCACTGTGCTGCAGACTCTGGAGGTCACTCTGCAGGAGTGGGGCTTCACACAAGACGACCTCACTGCCATTCAGCAGATCATTAAACAGTGGGCTGAGGCAGctatgcaggctgtcatggacTATCAGTCACAGCTCTCAGACCAGGACAAGGGTGGAGCTGGAGCTCAGACTGATCTGATAGGGGTGGAGTTTGCACTGATGCAGCAGGATGGAAAACTGCGCCCTCTTCTCCTGAGGTTGACTGCCCACCACAGAGGGGTTTACAGCACAGCCTTCAGTCTCCTGATGCTCCCAAGGCTGGCCCATACTGTGGAACCCCTCCTACAGACCATGTGCCAAAGAGCCCACTCCTTCTTCATAGCCGGGAAGACAATACTTGTAATCGGAGGAGGCGAGTCCAAGAAGATGTCCGTGTGGCACACAGCCAAGAAGCAAAACATCAGGgtaaTCTTGGTAAATCCCGAATCAGATCACCCTGCAACCCACCTGGTGTGGAAATTTCTGCATTACAATTTTACTGATCACTCACAAGATGAAGCTCATGCCTGCAATATAGCCAGAATGATATGTGAGTCAAATCTGAATATCAATGGCTGCTTAACATTTGTTTGTAACTGTTCTATTCTGACTTCTCTTGTGTGCCAAGAGCTACGTCTCCCTAGTAATGGTGTTGAAGTGATCAACATTGCCAAAAAGAAAAGTCACACCCAGCAGCACTTGGGAAGAGTTGCTCACAGTCTGCAGCACTTCCCTGATGTCTCACTCTACACAGTGCCCTGCTTGCAAGTCAACAGTCCAGCAGAGCTTCAAGAGGTGACAGAGAAAGTTGAGTTCCCTGTGGTAATGAAACTACAATACAGCGCAGATGCATTGGGTGTCAAAATGGTAGAGAATCTCCAGCAATGTCAGGAATTCTTTGATAGCATACAACATGAAGAACTTTTCACTCTGGGAATTGGACAAAAACCATTGCTAATGGAGTATGTGGGGGGGATGAAGCATGATGTTGACCTGATCATCTTCAGTGGGAAGTTACTGGCTGCCTTTGTCTCCGACTGTGGGCCTTCTCATCTCCCTTACTTTCTGAACTCATCACACAGCATGCCCTCTAAGCTCTGTCCTGAGAAGGTGACCCAGCTGGTCACTGCAGCTTACCAGAGCTGTACCTACTGTGGCCTGAAGAACGGTGTCTTCAATGTTGACTTAAAAATGACTGAAACAGGTCCAAAACTCATAGAGATCAATCCAAGAATGGGTGGGAACTACTTGCCTGCCTGGATTAAGGCTGTCTACGGATTTGACCTTATTCTGGCTAGCTTTCTAATTGCCTTTGATATCCGACCACATGCTTGGACCCCAGAGCCCAGGGGCCACGTTGCTGGGATCTCAACCTCCATGACTCAGTATCTGCAGGCCTTAGAAAACCATTCATTCActgcaaatttaaataatttggagaTAAATGGAATTATCCATAGTTCTATGATAAGAGATGAGTCCAGCAAATCTGGCTTTGAAGTTGCCGCTCTTAACATTTCCAGCTTTAGCCCCAGCAAGGAGGAAGTCTTCAAGAGACTCCTGATTGTCTCAAAAATCCTTGGATTGGATTCTAAAGAGCATCCAGCTCTCTCCAATACCAGGATGCAACAGACTGCAGACACAAAGAAAGACCATGAAGCAACAGTTCAGGGTTCTCATTACAATGTGGCTGAGCATCTGAGCCACGATGGGGGAGATGGCTCTCATCTTCAGCAGGAGGACGACACGTCAGCGCTACAGCTGTACCACTCTCTACAGCAGATACtactggagctggggctgccaGAGACTAGAGACCGCACAACACCACGAGGCCACATGCTGCTTTGCTTGTCCTCCACGTGGCTCTCCAAGATCCCTTCCCCTGAGCACCCTGggctcttctctctctgtgtccataAAGCGATCACTTTTAAAGAAGGGGGCCACACTTACCTTGATTCCTTCCAACCTCCCTGTCGTGTCAGCTACTTCCTGAGCTCATTGGGCAGCTACAGCACCCAAGCCCAGGATAAAGAGGGACCATGCCTGGACAGCAAACTGGAGGCAGATTTGGACTGTCCAGCCTGTGGCTCTCCACAGCTCAGCAGGATCACTGAAAACATGCTGCTGACTCGCCAGCTGCTGTCCCAGAAAGGGGTGGGCATACTCCAAACCCTGGCCTTCTCCTTCCACCCTCTCCCCACATCCCGGCCCCCACACCCCAGCATAACAGTAGTTTCAGTCCAGTTGAAAGAACAACTGCAAGAGCTTATGCCTGGAGCcatcaacacatttcttcaACATCCAGAATTACAGAGCTGCCATGAACCTTCTGGTGGGGGCTGGTATTCCTGTGATAACGAGACGACCCTTGTGAAGAGGGACAGGGAAGGAGTCCTCAGTGCCACACTAGCTCTCCTGCCCAGGATCCAGGAAGGAGAGTCCATTCTCATCTTAGCATCATATGAGTCGGTCCAGCCTCAGAAACCACTGAAGCTGGAACAGAGCATAGCTTATCAA

Function

GO: NA

KEGG:

id description
K14755 CRNS1, ATPGD1; carnosine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45206 lncRNA downstream 85965 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 131099 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 271937 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 536287 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 546114 36911626 ~ 36911979 (-) True G36095
TU45330 lncRNA upstream 249133 37738275 ~ 37740601 (-) True G36267
TU45347 lncRNA upstream 484311 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 498101 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 498101 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 562071 38051213 ~ 38109937 (-) False AMCG00019698
AMCG00019683 mRNA downstream 32975 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019687 mRNA downstream 59466 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019685 mRNA downstream 73592 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019682 mRNA downstream 148989 37238889 ~ 37309104 (-) True AMCG00019682
AMCG00019679 mRNA downstream 237665 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019688 mRNA upstream 2094 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019684 mRNA upstream 76128 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019692 mRNA upstream 252367 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019698 mRNA upstream 400302 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019701 mRNA upstream 718740 38207882 ~ 38222789 (-) True AMCG00019701
TU44832 other downstream 2402649 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2935823 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5224695 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7772791 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7812130 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 5054974 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5155182 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5809089 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 6088167 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7407357 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile