RNA id: AMCG00019692


Basic Information

Item Value
RNA id AMCG00019692
length 2275
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00019692
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37741509 ~ 37745656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGCGGCTTTCGCAGCTGAGCGCGGCTTCCGGGCTTCCGGGCTTCCGGGCTGGCGGATGTCAGACGTCACTGCACCGCTGACACGGCGGAGCTTCATTAAGTGCTACCGCAACATGCCGAAGGACAGAGTCCACATCAGCCTGGTCATCATCGGCCATGTGGACAGCGGGAAGTCCACCACCACCGGCCACCTGGTGTACAAATGTGGCGGAGTTGATCCCAGGACTATCGAGAAATTTGAGAAAGCTGCAACCCAGATGGGGAAAGGCTCTTTCAAATATGCTTGGGTCCTGGATAAACTGAAGgctgagagagagcgagggattACCATCGACATCTCCTTGTTGAAATTCAACACCCATAAATTCTCCATCACCATCATTGATGCGCCGGGGCATCGggatttcattaaaaacatgatcaCTGGGACCTCACAGGCAGATGCAGCGCTCCTAGTGGTCTCGGCAGCCAAAGGCGAGTTCGAGGCAGGGATTTCCAGGAATGGCCAAACGAGGGAACATGCACTGCTGGCCTACACTCTGGGTGTCAAACAGCTTATTATTTGCGTCAATAAGATGGATCTGACCGAACCCCCTTACAGCCAGAAGCGTTTTGATGAGGTGGTCCGAAATGTGACGGTCTTTGTCAAGAAAATCGGTTACGATTCCACGGCCGTGCCCTTCGTCCCCATCTCTGGCTGGAACGGAGAGAATATGCTGGCTCCCTCCAATAAGATGCCCTGGTTTAAAGGGTGGAAAACCAAACGGAAAGAAGGCATTTCAAATGGCAAAACCTTACTGGAAGTCTTGGATTCCATTCTGCCTCCTGTCCGCACAATCAACAAACCTCTGCGGTTGCCCTTGCAGGATGTTTACAAAATTGGAGGTATTGGCACTGTACCCGTAGGAAGAATCGAGACGGGCATATTGAAGCCTGGGATGCTGGTGACCTTCTCTCCTGCTAAACTGACGGCGGAGGTCAAGTCCATTGAAATGCATCACCAAGGTCTCCAGACTGCTTTGCCCGGGCACAACATTGGCTTCAATATCAAGAATGTGGCAGTGAAGAACCTGCGGCGTGGGGATGTCGCAGGAAACGCCCAGAACGACCCTCCTGCTGATGTGTCTAGCTTTACTGCACAGGTAATCATTCTCAATCATCCTGGAATGATCAAAGTGGGCTACTCTCCCGTCATCGACTGCCACACGACCCACATCAGTTGCCGATTTGCCGAGCTGAGGGAGAAGATTGACCGTCGCTCTGGCAAGAAGCTGGAAGATGATCCTCAGGTTCTGGTCTCTGGGGATGCCGCTACGGTGAAGCTGGTACCAACCAAGCCGATGTGTGTTGAGAGCTTCTTTAACTATCCTCCTCTAGGCCGGTTTTCAGCCAGGGACCTGAAGCAGACCATCGCAGTTGGCGTCATCAAATCGGTGGAAAAGATTGATACAAACCCAAAGAAGTCAGCACCAAAACCCCAACTTATTAAATGATTTGCTTGTTTGAATGTGAACAGAATTTTGATGGAAAGTATAATTGAAAGGCAGGTTTAAGTTTGAACATTGGAGTTCAGTtttaagtttgtgtttttgctttaaaatttAAGTTTCCAGCTGGTTTTggatataaatgtgtatataaatggcAGTTCTGGTGCAGTAGCTTTAAGTTGGAAAAATGATTTGGTGctaaaatttttttttttttttgtaaataaagtcCTTTCTCAACTGCTATGGAACTGTGGTGTACTAAGTACAGGTGCCCAGATGAGGGctcattaatttacatttaaatttctcCTCTTCTCCATATAAATGGGCAGTGGGTTCTTCTAGGACTAACTTTCACTGTAACCACTTTCTACTCCACAAGCCTGCACTCGCTTCCCCTTCAAGCTTATTCACAAGTGTAAGCAACCAGCCTCATCAGGAAATTTCTTAACCCTGGGAACGATGGCCAGCTGTGTGAGGAAGCTTGATTTATGTACATGCGGTGAAATGCATGCAGAATGTTTATAGACGGCACTTCTGAAattaacttaaatcttgtgtgtgtatatatggtgGAAGGCTGGTCAGTTATGACTGCAACCATGGCCAATATTCCACTGCACTCTTCTGTACAGTACTGGTATGGCAGTAGGGCTTGGTATCCTGCAGATCTGTCTATACGTGGGGAAATGTGAGAAGCTGTTAATTTGCTTATGCGAGGCAGGCTGTAGTTTTTGGACTGTTGGGCCTCCCTGACTGAACCCGGTTTAATGTTTAC

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K00956 cysN; sulfate adenylyltransferase subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45330 lncRNA downstream 908 37738275 ~ 37740601 (-) True G36267
TU45206 lncRNA downstream 369381 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 414515 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 555353 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 819703 36921583 ~ 36921806 (-) True G36097
TU45347 lncRNA upstream 227797 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 241587 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 241587 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 305557 38051213 ~ 38109937 (-) False AMCG00019698
TU45377 lncRNA upstream 354897 38100553 ~ 38109937 (-) False AMCG00019698
AMCG00019684 mRNA downstream 151448 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019688 mRNA downstream 248640 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 252367 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019683 mRNA downstream 316391 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019687 mRNA downstream 342882 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019698 mRNA upstream 143788 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019701 mRNA upstream 462226 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019703 mRNA upstream 517236 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 520698 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019704 mRNA upstream 597316 38342972 ~ 38350616 (-) True AMCG00019704
TU44832 other downstream 2686065 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3219239 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5508111 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8056207 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8095546 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4798460 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4898668 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5552575 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5831653 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7150843 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile