RNA id: TU45375


Basic Information

Item Value
RNA id TU45375
length 1483
lncRNA type sense_over
GC content 0.48
exon number 7
gene id AMCG00019698
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37889444 ~ 38110224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAAGCAGGTCTATGGCACCGTATTCAACAGTTGCTCCGGCGTTTGTTGCGCACCGCACTCATTTTGCGCACATGGAAGTACGCCGACATGCACGAAACGAGCGATTGTAGGACGTAACGGGACGTATACAGACCTGCTCCCGTCGAGGCGTGCAGCGCGCATAAACCCAAAGCAGCGCAACGAAGCGCAGCCGTGCAGCCCCGGCTCTGATCTCACCCGCGCCGTGACGTCACGCGCGGTCCGTGAGGTAGCAGAGCGTTCCGCGCAGCGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGAAGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGAAAATCATGAGACGATGACCTTTCAACTCAGCCAGCCCTGTGGAATGTCTGCTATACAGGATTGTCTGAAGCTGAGAAGTTATTTGGGGGAAATGAGTCCGACCGAGGAAATGGACCAAGGTGTAGCAACAAGCTCCACAGGAAAATGGACTGTCCTATAAACCTGTGTCAACTTCCCAGCAGGAACATTTGCATCTTAATTCCTTGTCAATAAGCTGTATTATCCAGATGAATTCCTAAATGCGGCTCCACCATGGCAGGGCTCCGAAACCATAGCTTTAATGCTAAAGGGATTACGGAAAAGCAGTCAAATCCAGTTTTGTGAAGAGAACATGGCAGCAGGTCTATCTGAAAGCCGAAGAGGATGTTTTCCTGGATGGGAACTGGGACTTGCGTTTCAAGAAGAATGAGTAGTGCCCACAAGCAACTCTGctaaccccctcccccccgctTGATAAGAAGCTGTATTGATGCATGACACATGACACCGGAGCCAGGGATTGCCAGAGTTGTGATGAATTGCCCTTTCTTGCCTCTCCAGCTGTTTCCCACTGTCCTGTGCCATCGGCCTCAGGCTCCCACCACTGAGAACTGGAGTCTTTATTTACAACTACCTTTTCTTTTATGCCTCTTTATGCCTCATTTAAAGACACTAGATTCAGTTCAACTAAAATATGATTATTCTTCAGATATGACATTCATTCTCTACACTAATCCTGTTGACTTTCATTTCCCCATCCAGCCAGTTAGATTGGCTTTTGTTGTCAAAGCTTTTAACATCTAGGATGTGTTTGCATATGTACGTTGACAtataatacatgtgtttttaaagattacatttatattttgaactATGGTTTTGCTGCTGTCTAACTGTTGTGGATATTGTAGTCCATACACGATGACTCATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45347 lncRNA downstream 13560 37973453 ~ 37973683 (-) True G36284
TU45330 lncRNA downstream 246642 37738275 ~ 37740601 (-) True G36267
TU45206 lncRNA downstream 615115 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 660249 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 801087 37167433 ~ 37186156 (-) True G36160
TU45387 lncRNA upstream 8513 38118720 ~ 38118934 (-) True G36312
TU45429 lncRNA upstream 343817 38454024 ~ 38454309 (-) True G36349
TU45501 lncRNA upstream 508634 38618841 ~ 38619657 (-) True G36386
TU45585 lncRNA upstream 968296 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 1135585 39245792 ~ 39293373 (-) True G36470
AMCG00019692 mRNA downstream 241587 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019684 mRNA downstream 397182 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019688 mRNA downstream 494374 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 498101 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019683 mRNA downstream 562125 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019701 mRNA upstream 97675 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019703 mRNA upstream 152685 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 156147 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019704 mRNA upstream 232765 38342972 ~ 38350616 (-) True AMCG00019704
AMCG00019705 mRNA upstream 516067 38626274 ~ 38626804 (-) True AMCG00019705
TU44832 other downstream 2931799 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3464973 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5753845 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8301941 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8341280 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4433909 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4534117 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5188024 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5467102 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6786292 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile