RNA id: AMCG00019701


Basic Information

Item Value
RNA id AMCG00019701
length 2680
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00019701
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38207882 ~ 38222789 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttattttttagCAAGGAGGTTGAGGGTGAACCACAAGACAGTAATGCATTAGAAGCTGGTGCTGTGCAGAAAGTATGCTGTGAAAAGCAGAGAGGAGAAGACCTGCCGCAGGCTCAGTGCAGACACCCAGAGGGGCTGGTTTCTTCTGACGAGGTTGTCCTGGAGGACAGGGCGCCCAGCCTCCAGAGGGCAGAATGTGCTCCTGTAGGAAGCGTTACTGAAGCTTCTTCCACCGGACAAGGCCTTGATGTTCAAGTGGGAAACTATAATGGGACAGCACTGGAAATGGTTACAAAACCTAAGGAACTAAGTTGTGCAATGTTTCCTGATTGCAAGGAAAAGAGTGTTGAACTCGAAGAACGAAATGCAATCAATGATGccaagaaagaaagcaagataGGTTTAGGAACAGAATCAGTGGATCTGGATCAGGAAATCTCTGTCCCAAGTTCAAACAGTGACATAAAAAGACCCAGGTTTTCAGAAGAAGTGGTGAGAAACAAGAGAGACTCCCAGGAATCATTAGCTGAAGGTTCTGCACCAGAAGTTGTGCTGATCAATGAAGTGTCATCTCTGGATGATATTGGACAGGATGTATCTGTGGAAATTGAAGAAGATGAGCAAGATAAGAGTACTCAACAGATGACGGAGGAAGACACCGCTTGCAGCGCCGAGATGGAGCTTGAGGGCCAGGCTGAAACTGAGAAGAGTTTGACTGAGCAACTTCCTTCTTCATCTACAGAAGCAGAACAGGTGAAAGATGAAAGTAGGACTGCTGAAGAAGATATTAATTCCAGTGATGTTGACTTGTATCGTGCTGAGGAGGAGATTGAAGAGATTCTTCAAGACAAATGCAGTATTGCTCCAGAGGTGGACATTTTAGCGTACAGTGAAAAAGAGTGGAGAGGAAACACTGCCAAGAGTGCTCTGATTAAAAaaGGTTATGAAGAGGTCTCCAAACACTTCAGTGGGTTGCGCAGAGTGAGAGGTGATAATTACTGCGCTCTTCGAGCCACTCTGTTCCAGGCCTTGTCCCAGAGTACCGAGGTCCCGAACTGGCTTCAGAAAGAAGACATCACCCAATTGCCTGAACAGCTGGCTGCAGATTACACGTGGATCACGAAGTGGCGGTTTCCCCAGGCGTCTGGAGAGGAAACCAGCATCACACAGTTGCTCAAACAAAACCTAGAACTTCTGAAGGAAAAGTGGCAGGCCGTGGTGCAGGCCCCCGGCCCCGCAGAGCGCCGCACGCTGTGCAGCCAGGTCTTCTGTAACTCGGAGGAGGAGTACTGCGTCCTGGAGGCGCTCAAGTTCCTGATGTTGAGCACCGCCATCGAGCTGCACACCCTCATGCAGCGGGACAGCGACGTACCCGTCTTCTGCTGGCTCCTCTTTGCCCGGGACACCTCTGAATCCCCTCACACATTCCTCACCAACCACTTGAATCAAGTTGGCTTCACCGGTGGGCTAGAGCAGGTGGAGATGTTCCTCCTTGGATACACTCTGAAACAgacaatacaggtgtacaggCTTTACAAATCAGAGACTGAGGAGTTTGTGACGTATTACCCCGACGATCACAAGGACGAATGGCCACGTTTGTGTCTCGTTACGGAGGATGACAGACATTACAACGTGCCTGTCGCAGAGCAGGAAGGACAAACGCCATAACCAAAGGACTTGGACTGCGTAAGCTTTTGTGTTATTCAGCTGTGAAAGACGTGTATAATCTAGCTTGGTTTCATCTTTGAATCTATCCCTTTATTCAGGTAGTAATTCAAGCAGGTTTTTCAAAAagattttgttaatgtattattttaggaATGGTGatcaaaatcctttttttttttccttcatgaaAACCTTTCAGCACTATACAGTCTAGATGGGAAAGTTAAGagttcatttatatataaaagagagaacacaatatattttgataCCAGTCCCTAAAGCgtatgttttcttgtgttttttcaattgttaattTCTTTAACCTTCAGTCCTACAGACAGGCTTCTGAAGTAGTACCCTCAAAATCTGCCTGTGTCAGTTTACAATGTATATACAGGACAAACTGGATGCcgtgtaaaatgttttactctGGAATTGTAAGTACAGTGTTGGCTATTGAAACTAAAGTCAAACCAgtttataaactaaataaattggTGGTATTATAAAAAACACTAATGTTAAAAGTAAGAAGACCAATCAGAATCTGAAGTCATTGATTCATTTGAAAGCTCAGAGAGGATGGAAACCAGAACCCCGTCCTTAGCAAGGATCTGAGATGGACATTGCTGCCGCTGATGTCCTCAAGCTTTGCAGAAATAGAATTGACATTGATTGGCATCTGCGGACTTACTGGTGGTATCTGGGGTCATTGGTGCTACTGGCTTGCAGTTCTCAGACAGGACATGTTCAACTGTATGTTTTCCAAGGTCAACAATGGTATGGAAGCGATGGCATGTCCATAATTATCACAGGAAGCCTGAGTAAGCTTTACTCCCAAGTACAGGAATCTCCAGCAATGAACGTTAAAGTGACCAAAgcaaaatctgaaatgaaattggatgtaatttgtgttattgcttaataaatcttaattcaatttctatttgtaatacaatgtagattcatttatttagtaatcACTTTGATTATGCAAGTCGGG

Function

GO: NA

KEGG:

id description
K18343 OTULIN; ubiquitin thioesterase otulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45387 lncRNA downstream 88948 38118720 ~ 38118934 (-) True G36312
TU45375 lncRNA downstream 97675 37987243 ~ 38110207 (-) True AMCG00019698
TU45373 lncRNA downstream 97945 37987243 ~ 38109937 (-) False AMCG00019698
TU45374 lncRNA downstream 97945 38051213 ~ 38109937 (-) False AMCG00019698
TU45377 lncRNA downstream 97945 38100553 ~ 38109937 (-) False AMCG00019698
TU45429 lncRNA upstream 231235 38454024 ~ 38454309 (-) True G36349
TU45501 lncRNA upstream 396052 38618841 ~ 38619657 (-) True G36386
TU45585 lncRNA upstream 855714 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 1023003 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 1157019 39379808 ~ 39380708 (-) True G36495
AMCG00019698 mRNA downstream 97658 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019692 mRNA downstream 462226 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019684 mRNA downstream 617821 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019688 mRNA downstream 715013 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 718740 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019703 mRNA upstream 40103 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 43565 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019704 mRNA upstream 120183 38342972 ~ 38350616 (-) True AMCG00019704
AMCG00019705 mRNA upstream 403485 38626274 ~ 38626804 (-) True AMCG00019705
AMCG00019706 mRNA upstream 545372 38768161 ~ 38775844 (-) True AMCG00019706
TU44832 other downstream 3152438 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3685612 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5974484 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8522580 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8561919 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4321327 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4421535 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5075442 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5354520 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6673710 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile