RNA id: AMCG00019704


Basic Information

Item Value
RNA id AMCG00019704
length 444
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00019704
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38342972 ~ 38350616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTATTGGAACAATTCCGCTGATGCCTAATTCTGGTGTGCCGTCCAGCCAAGCAGGAGGCGCGACACAGGGTCTCCAAGTTCAGCCAATCACACCTCAGCTCTTGACCAACGCCCAAGGCCAGATCATCGCCACTGTCATTGGGAACCAGATCCTGCCAGTCATCAACACCCAGGGAATAACGCTGTCACCAATCAAGCCAGGACAGCAGGCCAGCCTTCTCCACTTGCCACACAGCCAAGTCTCCCTGTCTCAGAGCCCAGTGCGCCAggcctcctcctcttcctcaacatcctcatcctcatctgCTCTCAGCGTCGGACAGCTAGTCAGCAatcCCCAGACTGCTCCCAGTGAAGTCGACGGGGTGAACTTGGAGGAAATCCGAGAGTTTgccaaagcttttaaaatccGCCGCCTGTCTCTGGGGTTGACGCAGACTCAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45387 lncRNA downstream 224038 38118720 ~ 38118934 (-) True G36312
TU45375 lncRNA downstream 232765 37987243 ~ 38110207 (-) True AMCG00019698
TU45429 lncRNA upstream 103408 38454024 ~ 38454309 (-) True G36349
TU45501 lncRNA upstream 268225 38618841 ~ 38619657 (-) True G36386
TU45585 lncRNA upstream 727887 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 895176 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 1029192 39379808 ~ 39380708 (-) True G36495
AMCG00019702 mRNA downstream 73649 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019703 mRNA downstream 79302 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019701 mRNA downstream 120183 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019698 mRNA downstream 232748 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019692 mRNA downstream 597316 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019705 mRNA upstream 275658 38626274 ~ 38626804 (-) True AMCG00019705
AMCG00019706 mRNA upstream 417545 38768161 ~ 38775844 (-) True AMCG00019706
AMCG00019707 mRNA upstream 465883 38816499 ~ 38819280 (-) True AMCG00019707
AMCG00019712 mRNA upstream 491526 38842142 ~ 38865670 (-) True AMCG00019712
AMCG00019711 mRNA upstream 534390 38885006 ~ 38893548 (-) True AMCG00019711
TU44832 other downstream 3287528 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3820702 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 6109574 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8657670 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8697009 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4193500 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4293708 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 4947615 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5226693 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6545883 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile