RNA id: AMCG00019710



Basic Information


Item Value
RNA id AMCG00019710
length 1011
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00019710
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38825792 ~ 38832473 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTGAAAGGGCAGCTAACCAGTGAAGGTGTGGTGGGTGGACGGGAGACACATTTCACTTTGTAGCCTAAAAGGACGCCAAATATCAGTACATTGACCAAAACGGTTTTTCATAAAATACTGTAGCACTTTAAGACTGGTGACTGTAGTTATTGAAACAGAGTAAAGCACTGTGGGGAACGTCAAGATATTTGGAGCCGGTACTAAATTGATTGTTGATAACACAATACCCACCAAACCCATAGTGGTACGATATCCGCCTGTCTCTTTAAGTGGTGAGAAAAAAGCCCTGCTCTGCCTGGCTAAGGGAATGTTCCCACCTATTGTGCAATTTAAATGGAGCAATGAGGGTGAAGAGCTTCTGCAGACGGATAAGGATTCCACCAGCAGTTTACTGATCATTACCGACAAACAATATAGTGACCACAACTATAAATGTATAGTCAAACATGAAACAGGGGATTCTCAAGCTTTAGAGTTTAAGGTAACTGATGAAGacattttttatttgaatgtggcCCAAGTGACCTACACTGCCCTGATTGTGAAAAGTGTGGCATACTGTGGAATAGTGTCCTTCCTCCTATACCAGATGAAGTCCACTCCTGGTTCTGCCATGAAGATGATCTAATGACACAGGAAGTTCAAACTGCAAAAGGATGACAACATCACTCTTGCAGTTTATCATATTGCTCTTTGCTTAGTTAGAAATTGGTTTTATTGTAAGAcagttttgacattttaatctttttgtattgcttttgatagcatgtattgtattgtatagactgtttcttttcctttgacCTTACATTACagttatatacacatatatatttaaaccttTACTATATAATACAGgttgtttcatttcaaagttAACAGGGTAATGTAAATAGTATTTACCATAGTTCAATTATTTATACTCTGCAGCatgtttaatctataCTTGGTGATTCAGAGATGTTAATGTACTGCATCAAAATTAATTGTGCAAGATATTTCAATTGCta

Function


GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45442 lncRNA upstream 193614 38629208 ~ 38632178 (+) False AMCG00019708
TU45218 lncRNA upstream 1435830 37388328 ~ 37389962 (+) True G36189
TU45141 lncRNA upstream 1585298 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 1620830 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 1765148 37060418 ~ 37060644 (+) True G36106
TU45485 lncRNA downstream 23366 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 249637 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 425558 39258031 ~ 39258546 (+) True G36464
TU45633 lncRNA downstream 560019 39392492 ~ 39430557 (+) True G36497
TU45657 lncRNA downstream 874593 39707066 ~ 39709540 (+) True G36516
AMCG00019716 mRNA upstream 54000 38763195 ~ 38771792 (+) True AMCG00019716
AMCG00019709 mRNA upstream 92055 38662907 ~ 38733737 (+) True AMCG00019709
AMCG00019708 mRNA upstream 194144 38578316 ~ 38631648 (+) True AMCG00019708
AMCG00019699 mRNA upstream 592084 38232175 ~ 38233708 (+) True AMCG00019699
AMCG00019700 mRNA upstream 620133 38162404 ~ 38205659 (+) True AMCG00019700
AMCG00019717 mRNA downstream 6291 38838764 ~ 38840380 (+) True AMCG00019717
AMCG00019718 mRNA downstream 201108 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019723 mRNA downstream 484782 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019722 mRNA downstream 549674 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019728 mRNA downstream 979604 39812077 ~ 39830831 (+) True AMCG00019728
TU45249 other upstream 1309765 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 2526245 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 2761947 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 2761947 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 3974469 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 3724067 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 4128183 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 4429421 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 4497819 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 5220601 44053074 ~ 44056603 (+) True G37105

Expression Profile