RNA id: AMCG00019711


Basic Information

Item Value
RNA id AMCG00019711
length 2332
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00019711
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38885006 ~ 38893548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGATCCCCTGCGCGCCTGCGCGCCTGACCCAGCGCTCACACAGGCTTGAGAAGCTGCCGAGTCATTGTCTCAGATACAGCTCGCCGCTATTGGCCTTCGTATGTGCACATATCTGTAAGTCTATttcatacaatacaattatgcaCGTATTTATGCACATCGCCGTGCTGTTGCTGTCTTCAGCGGCTCCCTCGCTGGGCCGCTCCCGGGCAGACGAGCCTCCTCAGCCGTGCCAGGCGCCCCTGCAGTGGGAGGGCAGGTCGGTGCGGTACGAGCACAGCACGGGCAGGAACACCCGGGCCATCGTGTCCTATGATGGGCAGAATCAACGGATCAGGGttttggaggagaagaaaggaCACATTCCCTGTAAGAGGTTCTTTGAATATATCTACATTTACCAGAGTGCAGTGCTGTTCCAGATTGAGCAGGTCACCAAGCAGTGCTCCAAGATAGCTCTCACAGAGGCCTGGGACCCCTATGATATTCCAGACAATTCCACTTATGAGGACCAGTACTTCATTGGGGGGCCGGGGGacacaatacaggtgcaagagtGGTCTGACAGAAAGCCTGCCCGTAAAAATGAAGCTTGGGTTGGAGTTTACACGGTCAAGGACTGTTACCCGGTgcaggaaacatacacaaagaACTACAGTGTGACAACCTCCACCCGTTTCTTTGATCTGCAGCTTGGAATCAGTGACCCAGCAGTGTTCACTCCACCCAGCACCTGCCAGTCTGCGCGGGCAGAGAGGATGAGCCAGGACTGCTGATTCCTTAGGACCACACACTTCCCCTGCCATGACGGGCAGCTGTGTAGCGGTTAGGACTCTGGCCACTGGAGCagggggttgtgggttcagtctcAGGtgggtgggggacactgctgttgtacccttgagtaaggtactgtacctagattgcacTAGTAAAACACAGTGatatagtaataaaataaaaactaaaaaaactataGTCAAGCATGGCTGATGCTTGTGTGATCTAGAACTGGAAGAGCAAAGGTTAATGAAaggtattagtagtagtagtagtttttaCCTTCCTCGATATGAAAGGCAATATGGCATCTGCTTTTTTGCCTCAGAGCTCTAAGTGTCTTTATTGAACCAATTGTTTGAGAACAATTATTTAGTGTAaccatttttgttattgtcattttgtaaaactataataactacaataattgacattcatatattttgacACTATGGTAATATTGTATGCAAGGTGATAGACATTTCAATATGTTAATATGGAATTTGATGTCTTGAAAAAATATGGATTTGTAGGTGATCATTCTTAGAGAGTATACAAATGCTGCATTACCAATATTATTAATACCTAGGGGTACTCACCGTGATcacaaaatatagatataataatggaaaaagtAAAGAgctatttgaagaaaaaataacttgaaGAAAAGGAGTAGTGAAATTAACAATTTGTATGAACAATCAAAATGAAACAGATCAAATTTGTATTGAAGAATGATACAAGTTAGTAAAAATCATGCTAAGAGCTCATTAACAAATATCATCCtcatcctttttttttgctaaaGATGCCTCTCGAAgacattcatgtattttttcttatcaGAGAATAAACTGCTGCTCGTGAACTAtaactattactactactactaattattattatagaatcTATGGCTTGTATGGCATTTTTTAATGCACGAAAACTTTTGTGTTGCTAGGTTTTGTTTCctataattgtttttgaaaaatatgtagacaaattatttcaaattgggATACGTAAACCTTTGACAAAAACtatattgtgattttgttttttcatttatattatgcTATTTTCCAGTTTGGGGTAAAAAGGTTGCTGAAAGAACATTTGAAAGGTACAAGAGAGCTTTCAAATGAGAATTCAGTGATATAGCCACATAGTCGCCTTCCACTTGCTGCTCGAGTTTGTCAAGCACATAtcagttttatattgttttctgttaattatatgtaaatataatcagagattaaaaataaataaacatttactgataatacaaaataaacttatCTATATTTACAATCTGTCTTCAATATGAAAAAGTTGCTTTAATTGTTCATTAAATGTCCTACATGTATACTGTTACATTTATAGTTACAAATAGCTGCTTAGCTATTTAAGGCACCCACTAACATTTACCTATTACATTTTGAACCTGTGACAgaactatttgtttttatatataactgtCTTATGCTGATAAATGCTTTCATCAACTGTTTCCTATCTAgctgaattcaaataaaatacagatcaaCAAAA

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45501 lncRNA downstream 265349 38618841 ~ 38619657 (-) True G36386
TU45429 lncRNA downstream 430697 38454024 ~ 38454309 (-) True G36349
TU45387 lncRNA downstream 766072 38118720 ~ 38118934 (-) True G36312
TU45377 lncRNA downstream 775069 38100553 ~ 38109937 (-) False AMCG00019698
TU45585 lncRNA upstream 184955 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 352244 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 486260 39379808 ~ 39380708 (-) True G36495
TU45651 lncRNA upstream 523454 39417002 ~ 39417956 (-) False AMCG00019724
TU45676 lncRNA upstream 813054 39706602 ~ 39709528 (-) True G36534
AMCG00019712 mRNA downstream 19336 38842142 ~ 38865670 (-) True AMCG00019712
AMCG00019707 mRNA downstream 65726 38816499 ~ 38819280 (-) True AMCG00019707
AMCG00019706 mRNA downstream 109162 38768161 ~ 38775844 (-) True AMCG00019706
AMCG00019705 mRNA downstream 258202 38626274 ~ 38626804 (-) True AMCG00019705
AMCG00019704 mRNA downstream 534390 38342972 ~ 38350616 (-) True AMCG00019704
AMCG00019715 mRNA upstream 9255 38902803 ~ 38907186 (-) True AMCG00019715
AMCG00019714 mRNA upstream 35857 38929405 ~ 38953013 (-) True AMCG00019714
AMCG00019713 mRNA upstream 86562 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019719 mRNA upstream 188554 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019720 mRNA upstream 301946 39195494 ~ 39195833 (-) True AMCG00019720
TU44832 other downstream 3829562 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 4362736 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 6651608 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 9199704 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 9239043 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 3650568 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 3750776 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 4404683 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 4683761 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6002951 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile