RNA id: AMCG00019714


Basic Information

Item Value
RNA id AMCG00019714
length 1722
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00019714
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38929405 ~ 38953013 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaattattaatagtatCAGCTACTTATTTTTGAAGAGAACTAAAGTTGACTCCAATTGCGAGGTTTCACAGACAATCTCTCATTTTCTCCCCAGTGGCTTGTCGGACAACCTCATCCAAGACATCATCTGCAACTACCTTGTCCTGCCCAACCGCATCACTATTCCTCTAGTGGGAGATCTGCAGCTGGCCCGGCTACGCTTCCCTCTGCCCAAGGACCTGGAAGGGAAGGACAAGTTCCTGGGGGGGCTCATCAAGGGGAAGTCGGACCCGTACGGAGTCATCCAGCTTGGAAACCAGCTGTTCCAGACCAAGACGGTGAAGGAGAACCTCAACCCTAAATGGAATGAAGTTTTTGAGatTTTGGTATATGAGCATTCCGGGCAACACCTTGAAATCGAGCTGTTTGACGAAGACCCTGACAAAGATGACTTCCTTGGGAGTCTGATGATGGATGTGCCTGAacttcacaaagaaaaaaaggtggACGAGtgGTTCGTACTGGAGGAAGTCACTACTGGAAAGCTGCACCTGAAACTCGAATGGCTGTCATTATTTTCAACTCCTGAAAAACTAGATCAGGTCCTCACAAGTATTAAAGCGGACCGAGGCCAAGCTAATGACGGCCTTTCCTCATCCCTGCTTGTTGTTCACCTCGATTCTGCCCGGAATCTCCCGAGTGTCTTCGAAGGGAACTTTGGGTGTGGATACTTAAAAGAGAGGAGAGCTTCGGGCCTAGTCTTTTGTGAAAATACTACCTCACTCTATAGAACATTATTTCGCAACCCATTAGAATTTAACCCTGATGGCCTGAAGAAAACCTCAGTGAATAAAGCTCTgaagTCTGGGAAAAAAGTGAGCAGCGAACCAAATCCTTATGTTCACATGAGAGTTGGACACAAAAGTTTTGAGAGTAAGGTTAAGGACGAGAAGCATAAGTGCTGCTTAGGAACTCTGAACCTGCCGCTCGCTTCCCTTCTAGAAGCAGAGAACATGACTCTGCACCAGAAATTCCAGCTCAAGAACTCTGTACAGGTGAGGAAGGCAGGTCTGGGTGGCAAAGACGGCAACAGCAGCGCCCAGCCTAAGAGCCCCCCTCCTGCCGCCCCTTCCAAGAGGGCACCAGAGTCTCCTGCGCCCATGTCCAACGTGCCGCCCTCAGCCTCCGCTTCCGCCTTCGACCTCAGCAGAAGGCCAGAGTACCCCGAGCCACCCTTCCCTGGGAGCCCCCAGAAGTTGACCAATACGGCCCGGAGCACCTCCAACTTGGCCATCTCCGGCTCCCACTCACACCTAGCAGGCAAGGAGTCCACACCCAGCATTGCCTCTGACATCTCGCTCCCCTTCGCCACCCAGGAGCTGCAGCAGAGGCTTCAGCAGCTGCAGAATGGAACAGCTGCTAGCCAGTATCCCCTGGGCCAAGTCCAGCTGACTGTCCGACACAGCTCTCAAAGGAATAAACTGATTGTGGTGGTTCACGGTTGCCGGAACCTCATTGCGTTCACCGAGGATGGCTCAGATCCATACGTCCGCCTGTATCTGCTGCCCGATAAAAGGCGAACGGGCAGGAGGAAAACCCACAACATGAAGAAGACCTTGAACCCGGTGTTCGACCAGACGTTTGAATTCAGCGTTTCCATGGTGGAACTGCACCGGCGGACTCTGGACGTCGCCGTTAAGAATGGAGGCGGGTTGCTGTCGAAACACAAAGGGCTTCTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45501 lncRNA downstream 309748 38618841 ~ 38619657 (-) True G36386
TU45429 lncRNA downstream 475096 38454024 ~ 38454309 (-) True G36349
TU45387 lncRNA downstream 810471 38118720 ~ 38118934 (-) True G36312
TU45377 lncRNA downstream 819468 38100553 ~ 38109937 (-) False AMCG00019698
TU45585 lncRNA upstream 125490 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 292779 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 426795 39379808 ~ 39380708 (-) True G36495
TU45651 lncRNA upstream 463989 39417002 ~ 39417956 (-) False AMCG00019724
TU45676 lncRNA upstream 753589 39706602 ~ 39709528 (-) True G36534
AMCG00019715 mRNA downstream 22219 38902803 ~ 38907186 (-) True AMCG00019715
AMCG00019711 mRNA downstream 35857 38885006 ~ 38893548 (-) True AMCG00019711
AMCG00019712 mRNA downstream 63735 38842142 ~ 38865670 (-) True AMCG00019712
AMCG00019707 mRNA downstream 110125 38816499 ~ 38819280 (-) True AMCG00019707
AMCG00019706 mRNA downstream 153561 38768161 ~ 38775844 (-) True AMCG00019706
AMCG00019713 mRNA upstream 27097 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019719 mRNA upstream 129089 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019720 mRNA upstream 242481 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019721 mRNA upstream 410951 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019724 mRNA upstream 463874 39416887 ~ 39505562 (-) True AMCG00019724
TU44832 other downstream 3873961 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 4407135 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 6696007 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 9244103 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 9283442 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 3591103 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 3691311 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 4345218 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 4624296 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5943486 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile