RNA id: AMCG00019717



Basic Information


Item Value
RNA id AMCG00019717
length 342
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00019717
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38838764 ~ 38840380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTCCCGAATATTGTTACATTCATGTGGAAGAAGAATGGAATACCAGTCAATTACAATAATGCTGAAGCTCTTGAGCAGGTGGATACAAATTCAGTCAGCAGTCTACTGATAGTCAGTGACGATTCTGGATATACTTGTGAGGTCATACATGAAGATGGTACTGTGTCAAAAGATATTAAACCAAAAGACATTATCAAACATAAAGGAAGTTTGAACATGGCAGAATATACCTACACCCTCCTGATTGTGAAGAGTGTGGCATACTGTGGAATAGTGTCCTTCCTCATTTACCAGATGAAGTCCACTCCTGGTTCTGGCACGAGGAAGACAAATTCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45442 lncRNA upstream 206586 38629208 ~ 38632178 (+) False AMCG00019708
TU45218 lncRNA upstream 1448802 37388328 ~ 37389962 (+) True G36189
TU45141 lncRNA upstream 1598270 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 1633802 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 1778120 37060418 ~ 37060644 (+) True G36106
TU45485 lncRNA downstream 15459 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 241730 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 417651 39258031 ~ 39258546 (+) True G36464
TU45633 lncRNA downstream 552112 39392492 ~ 39430557 (+) True G36497
TU45657 lncRNA downstream 866686 39707066 ~ 39709540 (+) True G36516
AMCG00019710 mRNA upstream 6291 38825792 ~ 38832473 (+) True AMCG00019710
AMCG00019716 mRNA upstream 66972 38763195 ~ 38771792 (+) True AMCG00019716
AMCG00019709 mRNA upstream 105027 38662907 ~ 38733737 (+) True AMCG00019709
AMCG00019708 mRNA upstream 207116 38578316 ~ 38631648 (+) True AMCG00019708
AMCG00019699 mRNA upstream 605056 38232175 ~ 38233708 (+) True AMCG00019699
AMCG00019718 mRNA downstream 193201 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019723 mRNA downstream 476875 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019722 mRNA downstream 541767 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019728 mRNA downstream 971697 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019730 mRNA downstream 1014805 39855185 ~ 39889023 (+) True AMCG00019730
TU45249 other upstream 1322737 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 2539217 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 2774919 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 2774919 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 3987441 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 3716160 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 4120276 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 4421514 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 4489912 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 5212694 44053074 ~ 44056603 (+) True G37105

Expression Profile