RNA id: AMCG00019718


Basic Information

Item Value
RNA id AMCG00019718
length 3597
RNA type mRNA
GC content 0.47
exon number 21
gene id AMCG00019718
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39033581 ~ 39064073 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaaaacattgaacgGAGCTGTGCAACTAATGGGAGTGTAGAGGGAGAAGAGGAgtgatatatataataaaacatgcagTCGGACAAGaGAAGGACAAAAGAAGACACCTGGAAATctgatgatttaaagagacaTCTTAGGGGAGGAGTGAATGATGATGACAACACAAGGAAGAAACAGGTACAGATGAGAGATGAAGATGTAGTAAAGGGCAGTAGGGAGGAGTCTAGGGATCGGCGAGACAGAGAAAGGGGAAGCACTCGAGAAAGGCCTAAAGAAGGAGACCAAGAGAGGGACAGAAATcaagaaagaagaagagagagagatagggaccGGACAGCAGAAAGGCAGGAGACAGACCGGgacagaaggaaagagagagagaggatgggagACATTGAGAGGAACTCAAACaaggacagggacagagagagtaGGGACAGAAGACATGCAGAAGACAGAGGGACAAAAGGGGAAAGCAAGGAGCTGGAGAGGGacagggaaaggaaaaaagccGAAAGGGAGAGGCAGCAAGGGAAAGAGAGGCATAGGAAAAGTGatgagggaagagagaggggctCGGGAAGAGAAGAGCGAGAGGGTGACCAAACgaaagggagggaaagagagagggacagagacaaagagaaggagcaagagagagaaaatgggcAGCATCACGAGCAGGACCTTGAGAGAAGGAGGGGAAAAGACAGGCACAGACACAAAGATGTGGAGGAAGGCCACAGTGCAAAACCTGTGAGAGGCACAGACAGCTACACTGACAGGCAACGGGAAAAGGAGCTGGAAACCAGGAGAGAAAACGAAAGacgagagagacacagagaccgAGAACATTCTAaacaaagagaagagagagAATTCAGAGAGCTCCGCAGAAGTGACAATGAAGAACGAGACAGGAGGCGCAGAGAAAAAGAGGAAATGAACTATGGGGAGAGCCGCAGACAGGAGGGAGAATCCAGAGACAAGGAGAGGGAACGCAGGCGGAGGGAGTATCGCCTGCAGGAAGACCGggagaagagaaaggaaagaaaggagcATGAAGGCAAATCCAGAAACAAACACCAggagaggagatggagagaggaaaGTCAACCAGAGCAGGGCCAGAAATATACATCCGAAGAACTGCGCCAAGGCCAGACACAGCCCACGGCATGCCACAGAGAGAAACTGCTCCTGGCTGGAGCAGATAACGTGAAGCCAAgtaaggagaggagagaggtgaAAGCAAATAAGGAGATTGAAACAGAAGAATTAGGTATTGAAAAGCTCTCTGCTGAGGACCTGGTTAATGACGAGACAGTGGAAAACTATGAGGAAGACTTTGAAGactatgatgatgattttgAGGATGTGGATGAGGCTGACGACGGAGAAAACAATGATCTGGAGAGCGGTGAAATGAGAGCTGAAATTGAGGCCATCCGAAAAGCTATATCTGTGGAAAACGAATGCATCGGCACTGCACATCATGTAGCAGAGGAGCACAGCCAACACAAACGAGATTCCAGAAGTTCTCAAAGCAGAGGGGCAATTCACAAGGGAAAATATATTGACTTTGTGACAGCAAAGCAACGGGAGGTCAGCAAGAAGGTAGCCAGCAAGCAAAAGAAACGCAGCACAGAGCTGCTTCGGCTAGTTGACCTTGACTTCTCAGTCACCTTTTCCCTACTGGATTTGCCGCCTTTGAATGAATATGACATGTACATCAAAAGCTTTGGCAcgacaaacacaaaacaggttAGTATCAATCTGAAGATGCATCTGAgtCCTAATAGTGAAGAGTCTTTAAACGATTCAGTGAATAAACTGAGTATCGACTCGCAACGACTGTCCAGCTTTTTGCGGTCAGCTTCTCAGGTGATTGCTGTTCTCCTAGAAGAagacagagcagagcagcaTTCCCTTAAGAAGCTGAGATCTGAAGCTGACAGTTTGTCATTTGGTGATGGCTGCTTACAGCTCAATACCAAACTGTCGTTCCTGCATGGTCGCGAGGTGAGCCTGACCAGATTCTCACAAGCCAAGAAGCAGACCTTGCTGTCTGTGCACAGACCGCTGAGTAAGCCCACTGCAGTCTGGCTCGACCATAAGACGGTTGTTTGCATCTGGAACATCTGGGAGCCGTCGTGTCCACAGCAAGTCTTACTCTGCAACTCTGAGATCCGGTGCTGTTGCTTCAGTCCTGGTAATGCCACACTGGTATTTGCTGGCACTGATGATGGCTCTGTGGTCGTGTGGGATCTCCGGGAGCACTCCACTTTACACTACAGTATGAAAATAGGAGACAACGAGTGGACTCTACGCTACCCCACTTTTTCCACTGATGCTGTTCTAGCAACTTCAAGCCATTTCTGCCCAGTGAGGGCTGTGGAACCAGTCCCTGTGATTGCAGCAGAGGGTCACAGTCCAGGATTTTCTCTACTACCAAATCAGGAAGaTTTGCTAGGAATGTCATTTCAGTTGGCATCCCTCGATGAAAACGGACTTCTACATCTATggGTCGTTCTGGAACTTCCAAAAGTGAACCTGGCAGGATCGCAAATGGATTTGGGACTCAAACCAGGGGGAAGATTAAAGCTGCTGCATAGTTCTTCGGTCACTCCTATTGCAAGGTCTCTTCGCCGAGACACCTCACATATAGGCCCGCTGCAGGCCCTGACATTGAAGTTCTTGCCCTCAGATTCCAATCATTTCTTCATTGGCACAGACATGGGTTTAGTGTGCCACGGAACAAGACATGGATTGAAGATACCACCCAAGTTCTACAGGCCACAGCTGTCTGGGCACGCACCGGTGACCGTGACTTCACTGGACCTGTCTCCCTTTGGGGAACCAGTCTTCTTGGTTGGCTGCGTTGATGGGACTATCAGATTACATTCAGTCAGGACCGAATACCCAATCATGGAGTGGAATAGCAGTACTAATGGAGAGCCAATAGTCTCTGTACAGTGGGCTGCCACAAGACCCATGGTCTTCTTTGTGCTGGATGCAGCTTCTAATATCTATGCCTGGGACATGCTGGCAAAGGATTCCCAGCCACTAATCAAGGAAGCCATTCAACCCGATAGggttACTGCCATTGCTGTTTTTGGTGACCCAGGAAAGTCCAATTCCTTTTCAGGAATCTCGCTGGCAAAGCAGTCTGGGAAAATTGAAATTCAGTACTTCAACAAACAGTGGGCAGTGCCTTGCCCTAACGAGTTAGAGAGCCTGCAGAATGTTGTGCTTCAGTCTTGCTAAGATTTATTTGCAGTATTTATATGACACGTGATGGGCCAGATTAGCTCAATTGAGGTGGCAGATGTTAatcaaattaatggaaaaataactttGAGTCTCCACACCCTGATCGGACATCTCCACTTGTAGATGCATTTATGTACCCTGCCTTGTTAGCAAATTGAcacatatctataaatataaatctttaaatTTCAACACTGcacatccatttaaaatgtttagcaTTTTACAGTGTTATCAAAAGTCTAGgtgaatatttaattatcagtataatacatttttatggttACTGTATTTAAAGTGATGTCCATAGCATTTTCa

Function

GO: NA

KEGG:

id description
K22869 WDR60; WD repeat-containing protein 60

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45485 lncRNA upstream 175725 38855839 ~ 38857856 (+) True G36370
TU45442 lncRNA upstream 401403 38629208 ~ 38632178 (+) False AMCG00019708
TU45218 lncRNA upstream 1643619 37388328 ~ 37389962 (+) True G36189
TU45141 lncRNA upstream 1793087 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 1828619 37201924 ~ 37204962 (+) False AMCG00019676
TU45583 lncRNA downstream 18037 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 193958 39258031 ~ 39258546 (+) True G36464
TU45633 lncRNA downstream 328419 39392492 ~ 39430557 (+) True G36497
TU45657 lncRNA downstream 642993 39707066 ~ 39709540 (+) True G36516
TU45739 lncRNA downstream 1284131 40348204 ~ 40348476 (+) True G36585
AMCG00019717 mRNA upstream 193201 38838764 ~ 38840380 (+) True AMCG00019717
AMCG00019710 mRNA upstream 201108 38825792 ~ 38832473 (+) True AMCG00019710
AMCG00019716 mRNA upstream 261789 38763195 ~ 38771792 (+) True AMCG00019716
AMCG00019709 mRNA upstream 299844 38662907 ~ 38733737 (+) True AMCG00019709
AMCG00019708 mRNA upstream 401933 38578316 ~ 38631648 (+) True AMCG00019708
AMCG00019723 mRNA downstream 253182 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019722 mRNA downstream 318074 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019728 mRNA downstream 748004 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019730 mRNA downstream 791112 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019729 mRNA downstream 849909 39913982 ~ 39919021 (+) True AMCG00019729
TU45249 other upstream 1517554 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 2734034 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 2969736 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 2969736 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 4182258 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 3492467 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 3896583 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 4197821 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 4266219 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 4989001 44053074 ~ 44056603 (+) True G37105

Expression Profile