RNA id: AMCG00019722


Basic Information

Item Value
RNA id AMCG00019722
length 1164
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00019722
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39382147 ~ 39414885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGGGAATCTGGTGTCTGGGAAGAGGATAGCACAGGCCAGCGGCAGAGATCTGGGCCAGATCGAAGACAATGACCAGGCAagaaagttcctcttcctgtcagaggtGTTACAGTGGAGAGCCCAGACCACCCCAGACCACGTGCTGTTCACTCTGCTCAATTCAAGGGGTACCATCGCTAGCTCCTTGACCTGCCTCCAGCTCCACAAGCGAGCAGAGAAGATTGCTGCCATGTTGGCAGAGCGGGGGCACCTGCAGGATGGGGACCACGTGGCTCTCGTCTACCCCCCAGGCATAGATCTAATCGCGGCATTTTATGGGTGCCTGTATGCTGGTTGTGTGCCAATCACAGTGAGACCACCACATCCTCAGAATATCGCCACAACCCTGCCCACTGTAAAGATGATTGTGGAGGTCAGCAGGTCAGCGTGCATAATGACGACACAGGGAATCTGCAAACTGCTGAGGTCCAGAGAGGCGTCGGCCGCGGTGGACGTCAGGACGTGGCCTCCAGTCCTGGACACAGATGATTTGCCAAAGAAGAGGCCCCCTCAGCTGTACAAACCCTCCAATCCGGACACTTTGGCCTACCTGGATTTTAGCGTTTCTACCACCGGAATGCTAGCAGGAGTAAAGATGTCTCACACAGCCACCAGTGCCTTTTGCCGTTCAATCAAGCTGCAGTGTGAGCTGTACCCGTCCCGAGAGGTAGCTATCTGCTTAGACCCTTACTGCGGCCTGGGATTTGTGCTCTGGTGTCTTTGTAGTGTGTATTCAGGACACCAGTCTATCCTCATCCCACCCTCGGAACTGGAGACAAACCCAGCGCTGTGGCTTCTCGCAGTCAGTCAGTACAAAGTGAGGGACACGTTCTGTTCCTACTCTGTGATGGAGCTATGCACCAAGGGCCTTGGACTGCAGACAGAATCGCTCAAGTCTCGGGGTCTGGACCTGTCTCGCGTGCGGACATGCGTGGTGGTGGCGGAGGAGCGGCCCCGGATAGCACTGACCCAGTCCTTCTCCAAGCTCTTCAAGGACCTGGGTCTTCACCCCCGAGCCGTTAGCACCTCCTTTGGCTGCAGAGTCAACCTTGCCATTTGCCTACAGCCTCACAGGCTGGGGAAGCTGGCCGAGCAGGTAGGGGATTTTCATGTTCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45597 lncRNA upstream 123601 39258031 ~ 39258546 (+) True G36464
TU45583 lncRNA upstream 299736 39082110 ~ 39082411 (+) True G36454
TU45485 lncRNA upstream 524291 38855839 ~ 38857856 (+) True G36370
TU45442 lncRNA upstream 749969 38629208 ~ 38632178 (+) False AMCG00019708
TU45218 lncRNA upstream 1992185 37388328 ~ 37389962 (+) True G36189
TU45657 lncRNA downstream 292181 39707066 ~ 39709540 (+) True G36516
TU45739 lncRNA downstream 933319 40348204 ~ 40348476 (+) True G36585
TU45740 lncRNA downstream 954347 40369232 ~ 40369540 (+) True G36586
TU45742 lncRNA downstream 966338 40381223 ~ 40381424 (+) True G36588
TU45751 lncRNA downstream 1039298 40454183 ~ 40454484 (+) True G36597
AMCG00019723 mRNA upstream 53306 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019718 mRNA upstream 318074 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019717 mRNA upstream 541767 38838764 ~ 38840380 (+) True AMCG00019717
AMCG00019710 mRNA upstream 549674 38825792 ~ 38832473 (+) True AMCG00019710
AMCG00019716 mRNA upstream 610355 38763195 ~ 38771792 (+) True AMCG00019716
AMCG00019728 mRNA downstream 397192 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019730 mRNA downstream 440300 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019729 mRNA downstream 499097 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019733 mRNA downstream 1276631 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019732 mRNA downstream 1303598 40718483 ~ 40729666 (+) True AMCG00019732
TU45249 other upstream 1866120 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 3082600 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 3318302 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 3318302 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 4530824 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 3141655 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 3545771 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 3847009 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 3915407 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 4638189 44053074 ~ 44056603 (+) True G37105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045659 False 5378 mRNA 0.54 37 NC_007135.7 27023274 ~ 27223041 (+)