RNA id: AMCG00019724


Basic Information

Item Value
RNA id AMCG00019724
length 2877
RNA type mRNA
GC content 0.55
exon number 23
gene id AMCG00019724
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39416887 ~ 39505562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAATATAACAATTGTGCCATACCTGGGAAGCTTGCAGATTTGGCCCAGAAACTCTGGAAATTCCATAGCTTTGCCGGAGCTCATGGGAATGGGGGtggagtgagaCCCCCTATTGCCTACCGCATCGGCCACGGCACTGACTTTGCCATCTCCTCCTTCTGCTCCTGTTTGAACCTGGCCCAGGACGGCAGCATCCTCTTCGGCATTGGCACAATAcATGTACACACAGAGGCAGTCCAGGCGGCACTGGCCAAGCACAAGGAGAGGAAGATGGCAGTGCCTATGCCGTCTAAGCGCCGCTCCCTGGTGGTGCAGACCTCGATGGATGCCTACACTCCCCCAGACACTTCATCGGGCTCAGAGGAGGAGGGCTCGGTGCAGGGAGACTCGCAGGGGACACCTACCTCCAGCCAGGGGAGCATTAACATGGAGCACTGGATCAGCCGGGCCATCCATGGCTCCACCACTtcctccaccacctcctcctcatccACGCAGAGTGGGGGCAGCGGGGCAGCCAACCGGCTCGCTGATGTCATGGCCCAGACACACATCGGGCCCATTGCTCACCTTTCAATGAAGAGAAAAGCATTGCCCGGCACAGTTGAGAACGGAAACTCATTGCGTCGGTCCTGTGAATTTGGATCAGAGCTGGCCTGGCCGCCCCTGGAGTCAGAGGAAAACCACTCTGCACCTCCAGATGTTACCACTTACACCACAGAGCACTCCATACAGGTAGAAAGGCCCACGGGATCCACATCCAGAGCGGCGCCCAAGTACGGCAATGCAGAGCTGATGGAGACTGGAGACGGAGTTCCTGTCAGCAGCCGAGTCTCAGCCAAGATCCAGCAGCTGGTGAACACCCTGAAGAGGCCCAAACGCCCACCCTTAAGAGAGTTCTTTGTAGATGATTTTGAAGAACTTCTTGAAGTCCAACAGCCCGACCCCAATCAGCCAAAGCCGGAGGGTGCTCAGATGTTGCCCATGCGTGGGGAGCAGCTGGGGGTGGTGACTAACTGGCCCCCCTCTCTGGAGGCAGCCCTGCAGCGATGGGGCACCATCTCCCCCAAAGCCCCCTGCTTGACCACCATGGACACCAACGGAAAACCACTATACATCTTAACGTACGGAAAGCTGTGGACACGCAGTATGAAAGTAGCCTATAATATACTGCACAAACTGGGGACAAAACAGGAGCCGATGGTCAGACCGGGAGACAGGGTGGCACTCGTCTTCCCTAACAATGACCCAGCAGCCTTCATGGTGGCGTTCTATGGTTGCTTATTGGCCGAAGTTGTTCCTGTGCCCATAGAAGTGCCGCTAACACGGAAGGATGCAGGAAGTCAGCAGATTGGCTTTCTGCTTGGAAGCTGTGGCGTTACTGTAGCCTTGACTAGTGATGCCTGCCATAAAGGACTGCCAAAAAGCCCCACGGGAGAGATACCGCAATTCAAAGGGTGGCCAAAGCTGCTATGGTTTGTCACAGAGTCTAAGCACTTGTCCAAACCACCACGAGACTGGTTCCCACATATCAAAGATGCAAATAACGACACTGCATATATTGAGTATAAGACCTGCAAGGACGGCAGTGTCCTGGGAGTGACTGTGACCAGAATTGCCCTGCTGACACACTGCCAGGCTCTGACTCAGGCCTGTGGATATACAGAAGCTGAGACCATTGTGAATGTATTAGACTTTAAGAAGGATGTTGGCCTGTGGCACGGCATTCTAACGAGTGTCATGAATATGATGCATGTTATCAGTATCCCCTATTCCCTAATGAAGGTGAACCCACTGTCCTGGATACAGAAAGTGTGCCAGTATAAAGCATGCGTGAAGTCTAGAGACATGCACTGGGCACTGGTGGCACATCGAGACCAGAGGGACGTCAACTTGAGCTCCCTAAGGATGTTAATAGTGGCAGATGGATCCAACCCTTGGTCTATTTCTTCCTGTGATGCATTCCTCAACGTCTTCCAGAGCAAGGGGCTGCGTCCAGAGGTGATCTGTCCATGTGCCAGCTCCCCAGAGGCACTCACTGTGGCCATCCGGAGGCCCACAGATGACAGCAACCAGCCCCCGGGCCGAGGCGTCCTCTCCATGCAAGGCCTGAGCCACGGCGTCATCCGGGTCGACTCAGAGGAGAAGCTTTCTGTGCTGACGGTGCAGGATGTGGGCACAGTGATGCCGGGAGCTCTCATGTGCGTTGTGAAGCCGGACGGTGTGCCCCAGTTATGCAGAACAGATGAAATCGgagagctctgtgtgtgttctATAGCCACTGGTACCTCTTACTATGGCCTCTCAGGCATGACCAAGAACACCTTTGAGGTGTTCCCAATGACCAGCACTGGGGCACCCATCAGTGAATACCCATTCACCAGGACTGGGCTGCTGGGCTTCGTGGGCCCGGGAGGGCTGGCGTTCATCGCAGGCAAGATGGACGGCCTGATGGTGGTGAGCGGGCGCCGGCACAATGCAGATGACATCGTGGCCACAGCCCTGGCAGTGGAGCCCATGAAGTTTGTTTACAGAGGGAGGATAGCTGTGTTCTCTATCACTGTGCTTCATGACGAGAGGATCGTGATAGTGGCCGAGCAGAGGCCAGACTCCACAGAGGAGGACAGCTTCCAGTGGATGAGTCGGGTACTGCAGGCAATAGACAGCATACATCAAGTTGGAGTCTATTGTCTGGCCCTCGTTCCCGCCAACACCCTCCCCAAGACTCCCCTGGGGGGCATCCACCTGTCAGAAACCAAACAGCTTTTCCTTGAAGGCTCCTTGCATCCCTGTAACGTACTGATGTGTCCACACACCTGTGTAACCAACCTGCCCAAGCCAAGACAGAAACAGCCAGCATGTAAGGTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12428 fadD32; fatty acid CoA ligase FadD32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45630 lncRNA downstream 36179 39379808 ~ 39380708 (-) True G36495
TU45604 lncRNA downstream 123514 39245792 ~ 39293373 (-) True G36470
TU45585 lncRNA downstream 334908 39078503 ~ 39081979 (-) True G36456
TU45501 lncRNA downstream 797230 38618841 ~ 38619657 (-) True G36386
TU45429 lncRNA downstream 962578 38454024 ~ 38454309 (-) True G36349
TU45676 lncRNA upstream 201040 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA upstream 201508 39707070 ~ 39709528 (-) False G36534
TU45684 lncRNA upstream 306748 39812310 ~ 39813571 (-) True G36539
TU45705 lncRNA upstream 392325 39897887 ~ 39901757 (-) True G36557
TU45719 lncRNA upstream 467194 39972756 ~ 40123987 (-) False AMCG00019731
AMCG00019721 mRNA downstream 46690 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 221054 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019719 mRNA downstream 319775 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019713 mRNA downstream 427756 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019714 mRNA downstream 463874 38929405 ~ 38953013 (-) True AMCG00019714
AMCG00019725 mRNA upstream 205425 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019727 mRNA upstream 227827 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019726 mRNA upstream 320793 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019731 mRNA upstream 464613 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 1224131 40729693 ~ 40766188 (-) True AMCG00019734
TU44832 other downstream 4361443 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 4894617 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7183489 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 9731585 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 9770924 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 3038554 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 3138762 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3792669 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 4071747 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5390937 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile