RNA id: AMCG00019725


Basic Information

Item Value
RNA id AMCG00019725
length 3611
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00019725
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39710987 ~ 39728290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGGGTGAACGCCCTACCAGGCTTGGGCCATTTTATTAAGGGACGAGACAAAAATTACGCTGCCGCCCTCTTGCTGTGTGGAGGCGCTGCTGCAAGGATGAAAACGAAGAACGAAGTGGAAGCTCTCTTCAAAGGGGAGAATTTACCCAAGTTCATCCACTGTGAGTTTGCCTACAACGACAACTGGTTCATCACATTTGAGTCCGAAGCAGATGCACAGCAGgCCTATAGGTATCTTCGAGAAGAAGTGAAAACATTCCAAGGCAAGCCCATCAAGgcaAGGATAAAAGCTAAGGCAATtgctataaatacttttttgccAAAGAACGGCTACAGACCACTGGATGTGCAACTTTACGCTCAACAACGCTACACAACATCATTTTACATACCTCCAGTGTACAGCCCCCAGCAACAGTTCCCGCTGTACAGCCTAATTACTCCACAGACCTGGTCTACGACGCACAGTTTTCTAGATCCGACGCTGGTAACGCCATTTCATAATACTGGATTTATCAATGGGTTTACATCGCCTAATTTCAAACCCGCTACATCTCCTTTGTCTGTGAGACAGTACCCTCCCAGGAATAGGAATCACAGTAAACCTCATTTGCGACCAACTATACCTACTGCAGACAGAGGGTCCGCGCTCCTGGACAGTCCCactatttttaatttccccacCGAGCGCCTCCTGAACGGCGTGCGGAGCCCTCAGACCCGACCCCTGAGCCAGAACCGGACGCGGCTCCAGGGCGGTGTGAGCTACCCCAAGAGGGACGTGGGAACGGGCCGCGTGGAGCCCATCAGCGCTGACTGTTCCGCCAGCATGGGCCGGGGCAGgaaaaatgtatatGGTTATAGGAAGAAAAGGGAGGACAAGTTTACGAGAGCCCCAACACAGTCCCCACCTCCTCAGAAGCCTCCTTCTCCGAGCTTCGAGCTGGGTCTCTCCAGCTTTCCCCCATTGCCTGGGGCCGCAGGACACCTAAAGGCTGAAGAAGTGTTTGAAAACACACTGTCCAGCATTATAATAGGAACTCCAAAGGACAAGaaTGTAAACATAGATGCCAGTACCAACACTACCCCTTCAGGAATCCCTAAAGAGCATACGCTGCCTCAGACTTCTCCACTGCCAGTGAGCTTTGAGGGACCTCCATCACCACCCCAGTCTCCAGACGAGTTACACATCCAGGAAGTGAAGCAAAGAGAGACGCAGACTCCACTTGAACGGCTGACTGGGACACTGACCACTGCGAGTAAATCCATACAAGTGAATGGTGCAGCTACAGAGCTTCGGAAGCCCAGTTATGCGGAAATTTGCCAGAGGACATCAAGAGACGCTCCGACACTACAGCCTCCGAAAGACCTGAAGCCAGCCAGCCCCCTGGCCCCTGTCACTGAAGACAAGAAATCCCCCGATGGCACAGGGGAGAAAGTGGAGCCCAAATGCCGAGAGACATACCCGGGAAAGGTCATCCCAGGACGGCCCAGGGAAGTTAGGAGACCGCTGGGGAGGAGACCGTCCCCGCCCCCGCCCCTGCAGGGCACCGGAAAACGTCCCATTAAAGATCTCAACACCCCCCCCAAATCTCCCCAGTAAATGCTGCATGGGAACGGAGCTCACAATGGATCAGGGCTGTCCAGCGCTATTCCCAGAGTCACCAGTGACAGCAAAAAGGACATATTTGCTGGATTCAGGGCTTGCAGACAAAAGCACTTTTAGTGTGTAGAGCACattcatgatttttatttattttttctttttgtttttttcgccTTGATTTAGTGTTAATCTGACCTGTTAAAAGGACAGTGCAATTTATTATCTGCTCGCAAATGAGCAATGGCTGGCTTCCAGGAGCAGAGTGTTTTAGCCAGAGGAATAACTGCTTTTTAGTCAGTTACTTCTATTATACGTGGATGTGAGGATCAAAAATGTGAGGTGCAGGACATTGGATCAGATCTCGGGTGGAATAGTGCTGAGCTCACTTGATCTTcgttttacttttatttctcagtttGGTCTTCTGATGTAATTTGTAACGAGTGGCTCTTTGAACTAGCAGGTAATCGGTTTCCACACCGgtcttttcattttacattgctttttgCATTAGGGTGAGTAGAACTACTTTGGCTGACttgatttaaatatagaatacttttttttttccctcttcttaGTGGTTTTACAGCTCATTGAACAGCACTAGAGTATGTTTTGCCAACacagctgattttttttaattttaacaccAGTGTATGGGATTTCTGTTTTTATCATTATGAATATAATGATAAGATTGCTAGTAGAAACATCCTGTCCCTGAAGCCTGCAGTGCATGCTGGTTGTGTTCAGAGCGCCTTAATTAGTTCTCTCTTCCTGTTACACTGAAGAATGCGAGCAGCCATCTGTTGAGGCCCAGGTAACTAGTTCTGATCAATGCGAAGCCTGTGGTGCTGGTGTTGTTGGAGAGGTCGTAGTCAAGGCCAGTGGAAATCTGCATCATCCCTGCCCAAGAGACTGATAGGAGACTTATCCAGTGCAATTAGATGGATTTAGCaggttaatttttatttatttttttctgctctgcCTGTGGGCGTTTCTTGACGATTTTTGTAAAAGTCTGTCGGCAAACTCTGATATTCAGGCACAGAGGCAGCAATAAGTACTGTGATGTTAGCATTTTGTTAACATTAAAGGGGCAGGAGAACATGCAATGTGTTCATTCTGTTAACTGgttcaaaacctttttttttttttctttttcagtttttttccttttagatATGGTGCTAGAGATTGTATtgtaaacttaatttaaattcttACTGTAATATTTAGAAATACTGGATTCATTTGTATAATTTCCATCCCCAAAGTGAATGTTGCACTATTGGTATGTAATAAGGTGTTTaaaaccttttctttcttttttttatcttaaaaggGAACCTTAAGCTGAGAAACTATGTGGATTTTAATACCGGTTTTCTCATTGACAAGAAACAGTGCAGTTTCCTTTGGCTTCTCAAGAACCTAACCCTCCCAGCCCCCAATAGTGTGATAATTTGAGTTATTCCCTCTTGCTTTAACACTTGAATGACTAAGCAGTCAGTAAAAATGCATCAGATGTAGGTTATCATATTCATCTTCCCCACAAAACGAAACACGGAAAAAGTGAAAGTTTTCTTTGTATTCAAGCAGAGGCAGAATCCACAGAATAATGAATCTCAGACATTTTAACTACAGCTTTGACTTCCTGTGTAGCCCTGAAGTCAAACTTATTTATCAATTCCTACTGGTGTGGGTGTTTCCTTACTGTGGCAAAAAAACATATAGGATGGTGGCTAACACAGAGCAGTGTGCTGTATCAGTCCAGAAAGGTATTGGCTCCTCAAATTGCTTGGATCTAATTTCTGCTCAGTGTGATGCTCTTCAATACACTAATTCACTCAGACACTTCGGTTGCATGTGGCGGTGTGTAAAGATTTCAGTAGACAGCACAACATTTGAGTGAATCGTTTGTGGATAACTGATTTGTATTGAAGATATACCTGTGAAGATGcgtacacacatatatactttttttttttttt

Function

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45676 lncRNA downstream 1459 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA downstream 1459 39707070 ~ 39709528 (-) False G36534
TU45651 lncRNA downstream 293031 39417002 ~ 39417956 (-) False AMCG00019724
TU45630 lncRNA downstream 330279 39379808 ~ 39380708 (-) True G36495
TU45604 lncRNA downstream 417614 39245792 ~ 39293373 (-) True G36470
TU45684 lncRNA upstream 84020 39812310 ~ 39813571 (-) True G36539
TU45705 lncRNA upstream 169597 39897887 ~ 39901757 (-) True G36557
TU45719 lncRNA upstream 244466 39972756 ~ 40123987 (-) False AMCG00019731
TU45727 lncRNA upstream 461530 40189820 ~ 40191361 (-) True G36576
TU45736 lncRNA upstream 606853 40335143 ~ 40335556 (-) True G36582
AMCG00019724 mRNA downstream 205425 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019721 mRNA downstream 340790 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 515154 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019719 mRNA downstream 613875 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019713 mRNA downstream 721856 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019727 mRNA upstream 5099 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019726 mRNA upstream 98065 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019731 mRNA upstream 241885 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 1001403 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1819628 41547918 ~ 41563384 (-) True AMCG00019738
TU44832 other downstream 4655543 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5188717 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7477589 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10025685 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10065024 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2815826 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2916034 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3569941 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3849019 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5168209 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045658 True 2773 mRNA 0.50 17 NC_007135.7 26997798 ~ 27019540 (+)