RNA id: AMCG00019726


Basic Information

Item Value
RNA id AMCG00019726
length 861
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00019726
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39826355 ~ 39830587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGACGCTGCTTGTGGGCGGCGCTGAGGACGGTGGCCTGCGAGGGTCTTTCCGCGGCCAGGCCGGGGACATCCGTGTCTGGGAAGAGCAGAGGAGCGGACGTGTGCGGTGCTCCAGCGGTTACAGCTGTTCACACGATTTCCAGGGGTTTTGGCAGATCGCAGAGGTCGTTGGCAATGCCAGAAATAGACACCAATAACCTGGACGAGAAACAAGTGCAGCTCCTGTCGGAGATGTGCATCCTGATCGATGAAAACGACCAGAGGACCGGAGCTGATACCAAGAAAAACTGCCACCTGAACGCCAACATTGACCAAGgttTACTGCATCGTGCTTTCAGTGTCTTCCTCTTTAACAGGGAAGACAAACTGCTCCTGCAACAGAGGTCTGATGCAAAGATCACGTTTCCAGGCTGCTTCACCAACACATGCTGCAGCCACCCCCTTCACACCCCCACCGAGATGGAAGAACTGGATGCTGTGGGGGTCAGGCGGGCTGCACAGCGGCGACTGCAGGCTGAGCTGGGGATCCCTGTGGAGCAGGTACCCCCAGAGGAAATGACCTACCTGACCAGGATACATTACAAGGCGCAGTCTGACGGGATCTGGGGGGAGCACGAGATCGACTATATTCTGTTTATGCAGAAGGACGTGGAGCTCAGCCCTGACCCCAATGAGATCAAAAGCCACTGCTACGTCACCAAGGAGGAGCTGAAAGAGCTGCTGGAAAAGGCCAAGAAGAAGGAGGTGCTGATCACTCCCTGGTTCAGTCTGATCGCAGAGACTTTTCTGTTCAAGTGGTGGGATAATCTACACAATCTGAAGCAGTTTGTGGATCATGACAAAATCCACCAGATGTAA

Function

GO: NA

KEGG:

id description
K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45684 lncRNA downstream 12784 39812310 ~ 39813571 (-) True G36539
TU45676 lncRNA downstream 116827 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA downstream 116827 39707070 ~ 39709528 (-) False G36534
TU45651 lncRNA downstream 408399 39417002 ~ 39417956 (-) False AMCG00019724
TU45630 lncRNA downstream 445647 39379808 ~ 39380708 (-) True G36495
TU45705 lncRNA upstream 67300 39897887 ~ 39901757 (-) True G36557
TU45719 lncRNA upstream 142169 39972756 ~ 40123987 (-) False AMCG00019731
TU45727 lncRNA upstream 359233 40189820 ~ 40191361 (-) True G36576
TU45736 lncRNA upstream 504556 40335143 ~ 40335556 (-) True G36582
TU45744 lncRNA upstream 573664 40404251 ~ 40404583 (-) True G36590
AMCG00019727 mRNA downstream 86112 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 98065 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 320793 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019721 mRNA downstream 456158 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 630522 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019731 mRNA upstream 139588 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 899106 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1717331 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 1743689 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019741 mRNA upstream 2240723 42071310 ~ 42078932 (-) False AMCG00019741
TU44832 other downstream 4770911 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5304085 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7592957 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10141053 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10180392 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2713529 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2813737 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3467644 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3746722 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5065912 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile