RNA id: AMCG00019728


Basic Information

Item Value
RNA id AMCG00019728
length 4531
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00019728
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39812077 ~ 39830831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaattggtaaGATTTACATTTCGTTTTATcttaatgatacatttttattttatttgctggCAGGTATTACGTCATTTGTTCTGTTAGGACTATGGTGCAAACAAATCGCTGAGCTGCAGAGGGCAGTGACACAAAATGATGCCACATTTCCTTCCGGGAGCGCTTGTCCAGGCGGGTTTGTTTCCGGGGTCGAAGGTCGAGTGTCCCGGAAGTGTCTTCGCGTCATCTCTAGGAGAAGCGAGCAGCGTGGAAGGGAAAGATGGCTCTGTACAATTTCAAGAAGATTATGGTGGTTCCCACCGCAAAGGAATTTATAGATATTACCTTGTCCAAGACGCAAAGGAAGACTCCCACGGTTATCCATAAGCACTATCAAATCCATCGCATTCGCCATTTCTATATGAGAAAGGTGAAATACACACAGCAGAACTATCATGACAGACTCTCCCAGATTCTCACCGACTTCCCCAAACTGGATGATATCCATCCTTTTTATGCAGATTTGATGAATGTTTTGTACGACAAAGATCACTACAAGCTTGCTTTGGGACAGATCAACATTGCCAAGAACCTCATTGACAATGTTGCCAAAGACTATGTGCGGCTGATGAAATATGGTGATTCTCTGTATCGCTGCAAGCAGCTGAAAAGGGCAGCGCTAGGCCGAATGTGCACCATCCTCAAACGGCAGAAGCAAAGTCTGGAGTACTTGGAACAAGtTCGTCAGCATCTCTCCCGTTTGCCAACCATTGATCCCAACACCCGGACCCTTTTACTGTGCGGGTATCCCAACGTCGGGAAGTCCAGCTTCATAAACAAGGTCACTAGAGCAGATGTGGAGGTGCAGCCCTATGCGTTCACCACAAAGTCGCTGTTTGTTGGACACATGGATTACAAGTACCTACGCTGGCAGGTCGTGGACACTCCAGGGATCCTTGACCACCCCCTCGAGGAGAGGAACACCATCGAGATGCAGGCCATCACTGCTCTTGCCCACCTGCGCTCCGCGGTGCTGTACGTCATGGACGTCTCAGAGCAGTGTGGACACACCCTGGAGCAGCAGCTGGAGCTCTTCAACAACATCAGGCCCCTGTTTGCTAATAAGcCTTTGATCATCGTGGCAAACAAGTGCGACGTGAAGAGGATCAGTGAACTGTCAGAGGAAAACCAGAAAATCTTTGCCGACTTCACTGCAGAGGGAATTCCTGTAGAAAGACCGCCTTTCATTCCCGAAGGGGCCTTGGCTCGCAGGAAAGCAATGGAGGTAGATGCACCCAAACGCAAACTGGAGAAGGATCTTGAGATGGAGCTTGGAGATGATTATATACTGGATCTCCAAAAATACTGGGACCTGATGAAcgcagaggagaaacaggacaTTATCCCGGAGATCTGGGAAGGCCACAACATTGCCGATTACATCGATCCCGACATCATGAAGAaactggaggagctggagaaggaggaggagctgaAAGAGAAGGCCGGGGAGTATGACTCGGATGAAGAGCTGGAAGATGAGGAGATGCAGGAGACGCGCCAGCTCGCCAAGCAAATCCGTGAGAAGAAGAAGCTGAAGATCCTGGCATCCAAGGAGAAGGATGTGCATGGGCCCAGAATGCCCAGGACCATAAAGAAGGTGGAAAGGAAAACTCTAGAGAAGGAGATGGGAAGCCTTGGCCTCGATATGACTAATAAAGATGAAAGTCACTATGCGCTGCAGGCCCGAAGATCGAGAAGCGTGACCCGTAAACGCAAGCGTGAGGCGTCCGAAGCTCCCACCTCGCGGACTCGCAGCCAGAGCGCCTCGCGGCCTCCCAGGGATGTGTCTGGAGTCCGAGACACAAAGATGTTGAAGAAGGTGAAGACTATGATGAAGAACTCCCAGAAGGAGATGAACCGCATGGGCAAGAAAGGGGAAGCAGACAGACATGTATTTGACCTCAAACCCAAACACCTCCTGGCGGGCAAGAGGAAGTCGGGCACTACAGACCGACGATAGAGGAAGTTCTCCAGCTCGACAGAACCTGCTGGTCCCCGTGCTGCCGTAGCCTAGCTTCTGCTTCATGTGTTACCAagactgcatttcattttcacttctcCTTGTTCTCCCCCCTGGTAAACTATCAATTAAATGGACATACAAATGatgctctttttttaaatgattcatcCTGGCCAACGTTTTAAAGTGTGTCACTGAGGCCACCTCCAGTGGAGTTGGAAGAAACAGTCCCAGGGCCAGGCTGTCAGCTTAGTCAAGCATGCTGTGATGGTACTCTTTTGAGGCCTGGGATCTACCAGATGGGATTCATGGTCAGAATTCTTCTGCCCCAGATCCCACACAGCTCAGGCCCCGGTTTCATTTTTGTCTTGgtagttgtttttaaaggaataattGCAGGACTTGGTCTTGCATTCATCTTAATctgcaaaatgcatttgcagCTGAAATACTTGGGATaatgtgaggggaaaaaatatgatTTCCAGTGTATCAACTGGTGTTGGTATAAGAAATATCACAGGTGCCTTGacattcatttacttttcaCTTACATTTACCCAAAAGGTGGAATTCAAGGTATGATCTctaaagcaatttgttttaaattaagatcCATGGATTTTTGAAGCACACTGCTTCAGTAtactgtttttgtaatgtttagcCGAGTATttaatcaatgttttgattaagAAACATAGTGATAAACCACCACCACTATTAAAAACTTATCAATACATTAACTTATATTCAATGTCTAGAATTTAGTGTTACAGATGGTTAAGTTGAAGGAGCAACAATGCTCCTAATTAATAAAAGACTTATCTACAATCtgccagtatttttttttatttgtgcattttcagGCAAACTACAGTATATGTAAAAGCAGGTTTGTTACATCTGAAGTAAACATCCTTAacaactgatttaaaaataattctcaactttccttccttctctccAGAACTCTGGCTATAACTAGACCTTTATCTAAGATATGAAGTGTAGCAATCAATACCTTTTCAAGCTGTAAAGACAAAGAGCCATTGTATCAAGTGTGATAATGCTAAGATGATCTACAGCACTCAAAACTGAAAACTATAGTCTAGTTTAAATCGCTGAAAGGTTCACGCCAACATTGAGtcttttcatatattttgtataaaggCAGTTTGAGatgttctaaaataattaacGTAATTGTACATTTCCAAATAAAAGCTACACCTAACAAATAGCGGTCTTGGTGGTAAGATTCAAAGGGTGCTTGCTTAAGAAAAACTAAGAGTTAAAACTAGTAATTCCAAAGGTATTTTAGAGGAACAAACAAGTCATGACTGTGCAAAGGCACAAATTAATCTCCCCAATAGCAGCTTCAGTACAGTTCTAACACCAGTGGTTAATATTGCTTTTACATCTGGTGGATTTTGTCATGATCCACAAACTGCTTCAGATTGTGTAGATTATCCCACCACTTGAACAGAAAAGTCTCTGCGATCAGACTGAACCAGGGAGTGATCAGCACCTCCTTCTTCTTGGCCTTTTCCAGCAGCTCTTTCAGCTCCTCCTTGGTGACGTAGCAGTGGCTTTTGATCTCATTGGGGTCAGGGCTGAGCTCCACGTCCTTCTGCATAAACAGAATATAGTCGATCTCGTGCTCCCCCCAGATCCCGTCAGACTGCGCCTTGTAATGTATCCTGGTCAGGTAGGTCATTTCCTCTGGGGGTACCTGCTCCACAGGGATCCCCAGCTCAGCCTGCAGTCGCCGCTGTGCAGCCCGCCTGACCCCCACAGCATCCAGTTCTTCCATCTCGGTGGGGGTGTGAAGGGGGTGGCTGCAGCATGTGTTGGTGAAGCAAACCTGGAAACGTGATCTTTGCATCAGACCTCTGTTGCAGGAGCAGTTTGTCTTCCCTGTTAAAGAGGAAGACACTGAAAGCACGATGCAGTAaacCTTGGTCAATGTTGGCGTTCAGGTGGCAGTTTTTCTTGGTATCAGCTCCGGTCCTCTGGTCGTTTTCATCGATCAGGATGCACATCTCCGACAGGAGCTGCACTTGTTTCTCGTCCAGGTTATTGGTGTCTATTTCTGGCATTGCCAACGACCTCTGCGATCTGCCAAAACCCCTACAACACACACGATGGGCTATAACCGCTGGAGCACCGCACACGTCCGCTCCTCTGCTCTTCCCAGACACGGATGTCCCCGGCCTGGCCGCGGAAAGACCCTCGCAGGCCACCGTCCTCAGCGCCGCCCACAAGCAGCGTCGCATCTTCAGACACGGTAGGAAGACCAATCAGGTTCAACACGCCATCACTCCACCGGTGATCGAAAAGTAGTGCCGAAAACTCAAATGCCCTGTATGTATGTTGTAAAGACACTACGTAGACGCCAAAACTGCAGTTTAGTTCTGTTGTTTTGCATGTCAACTCTTATCCGAAACATAGACTTTCACAGGAGGACGACAGTCTGTATAGGCAGGTCGGTCGACTGCTAAGGCAGTTCCCCCAGTGGCT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06943 NOG1; nucleolar GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45657 lncRNA upstream 102537 39707066 ~ 39709540 (+) True G36516
TU45633 lncRNA upstream 381520 39392492 ~ 39430557 (+) True G36497
TU45597 lncRNA upstream 553531 39258031 ~ 39258546 (+) True G36464
TU45583 lncRNA upstream 729666 39082110 ~ 39082411 (+) True G36454
TU45485 lncRNA upstream 954221 38855839 ~ 38857856 (+) True G36370
TU45739 lncRNA downstream 517373 40348204 ~ 40348476 (+) True G36585
TU45740 lncRNA downstream 538401 40369232 ~ 40369540 (+) True G36586
TU45742 lncRNA downstream 550392 40381223 ~ 40381424 (+) True G36588
TU45751 lncRNA downstream 623352 40454183 ~ 40454484 (+) True G36597
TU45752 lncRNA downstream 659085 40489916 ~ 40490115 (+) True G36598
AMCG00019722 mRNA upstream 397192 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019723 mRNA upstream 483236 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019718 mRNA upstream 748004 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019717 mRNA upstream 971697 38838764 ~ 38840380 (+) True AMCG00019717
AMCG00019710 mRNA upstream 979604 38825792 ~ 38832473 (+) True AMCG00019710
AMCG00019730 mRNA downstream 24354 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019729 mRNA downstream 83151 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019733 mRNA downstream 860685 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019732 mRNA downstream 887652 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019737 mRNA downstream 1474003 41304834 ~ 41312913 (+) True AMCG00019737
TU45249 other upstream 2296050 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 3512530 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 3748232 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 3748232 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 4960754 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 2725709 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 3129825 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 3431063 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 3499461 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 4222243 44053074 ~ 44056603 (+) True G37105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032832 False 2273 mRNA 0.47 16 NC_007113.7 42361373 ~ 42375275 (-)