RNA id: AMCG00019729



Basic Information


Item Value
RNA id AMCG00019729
length 537
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00019729
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39913982 ~ 39919021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGAATATTCTTGGTATCCAAGGATCGCTGCTCACTCACTTTGTGGAACCAGTTTACCTACATAGCCTGATAGTAGGCAGTCTGCATCACACTGGACACATCTCCAGAACAGTGTTGCATCGGCTCCAGAGAGTCGGACACCTTCCGGCATCCTACAAGCATAATCAGCCGCTGCTCAGTGGTCTGAGCAACAGTGACAGCCGGCAACCGGGGAAGTCACCAGGCTTCAGCGTCAACTGGACCGCCGGGGACACTGGACTGGAGGTCATTAACGCGTCCACAGGGAGAAGGAAGGACTCGGGCGCCTCATCCCGACTCTGCAAGCACGTGCTCTTCACTCGCTGGGCCAAACTCTATCGCAAGCTGAGCGTACAAGTGCCAAACCATGGGGAAATGCCATTGATGTACTGCGAAGCCAAGCTGGCGGCAAGAACGTACCAAACAGTGAAGCAGCAGTTGTATAAATCACTGCAGGACTCTGGACTGGGTACCTGGATAAGAAAACCACCTGAACAAGATCAGTTTCTGCTGCCTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45657 lncRNA upstream 204442 39707066 ~ 39709540 (+) True G36516
TU45633 lncRNA upstream 483425 39392492 ~ 39430557 (+) True G36497
TU45597 lncRNA upstream 655436 39258031 ~ 39258546 (+) True G36464
TU45583 lncRNA upstream 831571 39082110 ~ 39082411 (+) True G36454
TU45485 lncRNA upstream 1056126 38855839 ~ 38857856 (+) True G36370
TU45739 lncRNA downstream 429183 40348204 ~ 40348476 (+) True G36585
TU45740 lncRNA downstream 450211 40369232 ~ 40369540 (+) True G36586
TU45742 lncRNA downstream 462202 40381223 ~ 40381424 (+) True G36588
TU45751 lncRNA downstream 535162 40454183 ~ 40454484 (+) True G36597
TU45752 lncRNA downstream 570895 40489916 ~ 40490115 (+) True G36598
AMCG00019730 mRNA upstream 24959 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019728 mRNA upstream 83151 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019722 mRNA upstream 499097 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019723 mRNA upstream 585141 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019718 mRNA upstream 849909 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019733 mRNA downstream 772495 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019732 mRNA downstream 799462 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019737 mRNA downstream 1385813 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019735 mRNA downstream 1405673 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019736 mRNA downstream 1429420 41348441 ~ 41358215 (+) True AMCG00019736
TU45249 other upstream 2397955 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 3614435 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 3850137 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 3850137 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 5062659 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 2637519 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 3041635 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 3342873 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 3411271 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 4134053 44053074 ~ 44056603 (+) True G37105

Expression Profile