RNA id: AMCG00019733


Basic Information

Item Value
RNA id AMCG00019733
length 2492
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00019733
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40691516 ~ 40702922 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAGGCAACGGCGTCTCCAAAAGAAAGGGCCTAAGGCACAAACATCCCCTTCTGAAGcaGCTCTTAATAACATATTAGCAACCATGACAGACTCTTGGAAAGAATGCATGGACCATTGCATTGTTGTTACCCGAGAGGCTGGAAAGATGGTTCGCGAGGCCCTGAAATGTGACATTTCTGTAATGTTGAAGAGTTCTCCAGTCGATCTGGTGACCGAGACTGATCAGAAAGTGGAAGCGCTGATTATATCATCCATCAAGCAAAAGTTTCCAAATCACagTTTTATAGGTGAAGAGTCTGTTGCTGCCGGAGCGCCTAGCATCCTGACAGACAACCCGACCTGGATAATCGACCCCATTGATGGCACTACAAACTTTGTGCACAGATTCCCATTTATTGAATTTGGAATAGTGTACAGCTGCATAGAAGATAAATTGTACAGCGCCAGGAAGGGGAAAGGTGCATTTTGCAATGGAGTCCAGATAAGAGTTTCAGGACAGAAAGattcagaacattttcaaacaatgaTGTCTAACATGCAGAGGATTTTGACCATCCCAACCCATGGAATCCGGTGTGTTGGCAGTGCGGCTATTAACATGTGTCTGGTGGCCTCTGGAGCTGTTGATGCCTATTACCAAATCGGCATCCACTGCTGGGACATGGCAGGAGGGGCCATCATTGTTACTGAAGCTGGAGGGGTGATAGTGGACATCGATGGCCGCCCGTTCGATCTGATGTCTCGCAGGCTGATCACGGCCAGCTCCAAAGCCCTGGCGGACCGCATCGCTGTGGAGATCCAGCCTTTTCCATGCGGGAGAGATGACACCGAAAACTAGGACAGccccatttttttttagtttcccTGTAGACGATGAGTGTGACCGACTGTCACGTCAAAAATCCAACTTACGGTTGAAAAAGTAATGTTGCATTCCCGTTTTACCGATGAACGTTTTGTTTAGTAAATTTTCcctattgatttatatatttaattagctGATGGAGGTTAATAAGAGTGGCCCCTTCTCTGCTCAGATTTCCTGTACTGTCTGGCGGGAGGGGAGACAGGGGCAGATGGAAAATCACCAGTATTCTTACTCTTGTGGCTTGTGGAAACATTTGATCTGTAAACTTACAAGAAATAAAGAACTGCAAGGATgaaaaaaattagaaaaaccAAGCGATGCACATAAGTCCACTGAACTGCTTTTGCTTTATTACCAGTATTAACTACTGAGATGTGCTTATgaagaaacattttacaatttgatAAATCTGTTGATATATACATGATATATCTGTAAGGCAGGTTGGTTATgattgttaatttatatttatttttaatcttttctttagTTCTTTgccattcattttgtttaataaaaaatattaaccaCTTAAATCCAGAACAAAGCCACGGTGAGCCGGTGCataactcagcaggcacagggcATAAGGGCAGCACAGGGCAGCGTACACACACCACTCCCACGATTACAGGGATatttagagtagccaatcaacctaagcagccTGTCTTttggatgtgggaggaaaccagagcatGTGGAGAACAGGCCTGTATATTTGCCTACTCTGTTTTCTGCCTGGTGTACATATTCTCTTTTTTGTCAAGGCTTCCTGTTTTAAAAGGCTCTGAGAAAATCTGAGGCTATTTAAATTGTCACTCAAAATAGCGCTTCATTCAATTAGACGTTCTGTAGAAAGTATAATGCAGTGAAGGGTGAATTTGTAAACCACACGTATGTAAACTCTCAGGTAAAACTGCAGATCACGCTTATACACTGAGGTGTTTCTACCTTGTTTGAGCTTTGCAGCTATTTGCAGTCAAATACCACCTTAAATACACTGGGAAAGGAACATGTACTTGCCAGCACTGGCACTGTTATTCAAAATTGagaatttatttgtattctgttgtaaaatgcattatttgtttgtcaTGGTTATAGTTTTTGATCTCTTAATTGTAATATGTTGTAATATTTAAGATGTTCTCCCTATGGATCCTTtttgaaatcaaaaacaaataaacaaagacaaaagcaCAGCTTTTGTGCTGGTTAACATTTGTGGCATTTAGCATTTAAagggtacattttatttgaactcAATTTAAAAGCACAGTGTTGATAATACCACCGGCATAGTTTTATACCATTCAGAGTATGCCTGAATCCGGCTCTCATTTTTACATTAAGAACATTTTGGTTTTGGGAAGATTCTGGACTTGGCAAAtcacacactttgcatttagtttagcTTTACTTTATGACCATCTTAATTGAAAgtaatcacaataaaatgttgGTAGTCACAATCCTAGTTATCTGCATTGTAAAACGCAGATCTTGTTGTTTCTCAGTTTCTTTATCATTGTTCTgtcttctccttttcttttctgacCACTTTTTGTAAACGCATCTCCTCTTACTGTTTTTCAGCCAtcaaaattacacttttttc

Function

GO: NA

KEGG:

id description
K01092 E3.1.3.25, IMPA, suhB; myo-inositol-1(or 4)-monophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45758 lncRNA upstream 44829 40646448 ~ 40646687 (+) True G36604
TU45755 lncRNA upstream 111421 40579888 ~ 40580095 (+) True G36601
TU45752 lncRNA upstream 201401 40489916 ~ 40490115 (+) True G36598
TU45751 lncRNA upstream 237032 40454183 ~ 40454484 (+) True G36597
TU45742 lncRNA upstream 310092 40381223 ~ 40381424 (+) True G36588
TU45808 lncRNA downstream 168186 40871108 ~ 40871315 (+) True G36644
TU45818 lncRNA downstream 439268 41142190 ~ 41142574 (+) True G36654
TU45864 lncRNA downstream 1026240 41729162 ~ 41729411 (+) True G36698
TU45875 lncRNA downstream 1247203 41950125 ~ 41950350 (+) True G36709
TU45882 lncRNA downstream 1330093 42033015 ~ 42033516 (+) True G36716
AMCG00019729 mRNA upstream 772495 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019730 mRNA upstream 802493 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019728 mRNA upstream 860685 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019722 mRNA upstream 1276631 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019723 mRNA upstream 1362675 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019732 mRNA downstream 15561 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019737 mRNA downstream 601912 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019735 mRNA downstream 621772 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019736 mRNA downstream 645519 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019740 mRNA downstream 988649 41691571 ~ 41866477 (+) True AMCG00019740
TU45249 other upstream 3175489 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 4391969 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 4627671 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 4627671 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 5840193 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 1853618 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 2257734 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 2558972 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 2627370 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 3350152 44053074 ~ 44056603 (+) True G37105

Expression Profile