RNA id: AMCG00019734


Basic Information

Item Value
RNA id AMCG00019734
length 4010
RNA type mRNA
GC content 0.42
exon number 19
gene id AMCG00019734
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40729693 ~ 40766188 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTGCACCGCACGCTGTGACGTCACGCAGTTAGTTTCAGAAGTGGCTTCCTGGTTTATGCAATGCCTAttttttgtagcatttttaGACCCGTGTAGCTGTTTAACTGTGCTGATTTACTTCGTTTAACGGGGAAAATGTCAAGGATTGGTGCCGATAACGAAACCGAAGCTCTGAACAAGTGTAGGTACCGGTTTCCACTGGAGGTCATTGCTGATGTCAGGAAAGTGAGAGACTCATACAGGGATCTGCatctttttttagatttttactCTTACTCAAATGGGGAGAAGAAACAGCTGGTAAACCTAAGTGGTACCCTTCCCATTTTATATCAAGgtaacatttacaatatacCCGTCTGCATCTGGCTGCACGACACACACCCCCAGAGCCCTCCGAAATGTTTTGTAAAGCCCTCCGCTTGCATGGTTATAAATTCCCAGAGCCGATGTGTAGACAAAAATGGGCATGTGTTCCTGCACTACCTCCATAACTGGAAGCATGGAACTTCTAATTTACTAGGAGTTGTAGAGGAGATGAGGGCAGCTTTTCAAACAGAGACACCGGTGTTTGCAAGAGTACTCTCCTCTCATCAACCCCCAACTCCACTCCAGCCAGATGCAGCTCGAGATGACAGCTCCTCACATGCAGATGATTTTGATGACCTTTTCAAGAGTTTGCagcttgaaaatgttttaaatatttacaagttAGATACCAAAGCGAAAGgcttCACCACTACAATGGGTGAACAATTTAACAGTGGGCCCAGCCCCCAGGACCTCCTATTGGTGGACGATAGACATAAGATTGAAGTCAGTAGACTGCCTGGGGGCCTCCCGGAAGccaagatgaaaaacaaacttacCATTTACTTCCAAAGAAGAAAGAATGGAGGTGGAGACATCCTGGGCGTGCAGTACCCCTGCAGTCAGCCTAACCAGGCTTGTGTAACGTTCTGTGACCTGCAAGttGCAGAACGGGTCACCCAACAAGAGGAGCATGTCATTACTTTGAACAACCACAAGTTTCCCATTCAAGTAAAGCAATATGAAAGACCACAGGTGAATATTCCAGTTCCAGAAGGAGTTCCCAAAGAGAAATCGCATGTCTTCCAAAGCCTGCTGACTCTGGAGGGCAGGAGCTTCTCGGTGGACGATGTCATGGAGGCTGTGCAGTCCAACAGAGACTATGACTCTGCGCTGAGGTATCTCTCTCACGAATGCCCCATCTGTAGGGACTTGGTGTCCTTCAGCAAGATCATCACCATGACACACTGTTCCTGTGCATTCTGTGAAGAATGTTTCAAGGCCTACTTCTCCTCTGTCATCAAGGAGAAAAGCATTGTGCATGTGGTGTGCCCAATCTGCAATCAGCCTGATGTGAAAGTACAAGGGTGCACTGAGGAAACTATGGATTTCTTCAACCTACTGGACACACAGATAAAGCACTTCCTGGAGCCCCAAATTCATGAGTTATTCCAAAGAAAGCTGAGAGACAGAACTCTGCTGGAGATGCCCAACTTTCGGTGGTGTGCGCATtgtTCATTTGGGCTCCTGCATGAAGCAGAAAGGTTGCGGATGGACTGTCCCTCCTGTGGGAAAAGCACCTGCTCTCAGTGCAAAACCCCTTGGGCTCCACAACACGAGGGAATAACCTATTGTCCAAACTGCAGATTCCGCTTCTACCTATCCAAAGGCGGCTGCCTACACTTCAAGTGCACTCAGTGTCAGTATGAGTTCTGTGGAGGATGCAACAGGCCCTTCCATGTGGGATCTGCTTGCAGATTTTCAGAGGAGTGTCGTCTGAAAGGGCTACATGCACATCACCCAAGAAACTGCCTCTTCTATCTCCGGGACTGGCCTGTCCGGCGACTGCAGCAGCTCTTTATCCACCACAAAGTGTCCTATTCGCTCCAAATCAGAGGTGGCGAAGCAATGAACTCTGCTGGAAAATGCAGCGTATTGGAGCACAGAGAGACCGAAAGCGGCCTGGTGGAGAAGCAATGTGGGAGACCGGCTCCGCTAGAATACAAGGGGCACTGCGAACTGCATTACAAAGAGTTCTTGGTGGAGCTCATAAACAGCCATTTGCTGGATCCTGCAGTCCTGTTCAGCAAAGATGAAGCTGTCAGCGAACTGCGACGCTTTAAAGTGACAGTCCCTGGGTCTGCTCCCGAGGAACCTGACCAGTCTCACCTACATCGACTAAGACAGAAAGTGATTAAGGAAATCCAGCTGAGCCATGACCCAACCAGTCCACAGAAAGCTGTACCAGGACCCTCTCTAAACTTGTCTGCTGGGCCTACATGGGCTGCTCCAGGAGACAGGAGGCTTCATGACCGATATTCAGACTTACACTTGCTGCTGCTTCAAAGTGAATAAGCAGTGTGGCGGTTACCTCTTCACACTTGTAAGGATTCTatgaatattaacatttttcaacAGAGTACAGGACTTTTTAATGTAGGCATGTGACcaaggaaatatataaaatatgttgtgtTATCACTGGTTGTCATGAAGGAAATCGCTTGGATTTCttaaaaggaagaagaaaatataagtCAGACATAACAGCACTCATATCATTTGAGGTGTCTTTTTGCTCAGGCAGTACTGGGGGGCTTATCCAAATCCTTGCTTTATCGTGTTTATGTTTGGTTGGAAAAAGCCAGATCAGTATCCAACTTTCAACAATTAAGcaacagattttttaaatgaatgtatggTGTGGATATTGTACCCTGTGATGTTGATTTCCAgatgaataaattatttttatatatgtagttTATACTTTCACAGACTAGTGATTAATCGCTCCTACTGCACCCAGAACAACAACTCAATAGTGATGATGAAAAAACAGATTGCAGATGCATACATATTAATATCTTTAATGTACCATATATAACTCCACATATAAGTACAGTATTTTCCATGAAATATTGTACAGAATAGACAGACTTTGCACCCACCTATTATTAGAGCATAACATGTATGCTTGGGGTTGACATGCTTAATAGCATAGCCTTTAGATAAATGATAAGTTAGTACCAGTTGGTGGAGTACTGAATTCTGAGGtctaacaatacaaaataaaaccttgaaaAAACATTTCGGCACTGGCTTCCGTTGCCAGTATAATTGTGGTGCAGCAGACATTTTAAGCAGAGATATTCTGAATCATTGTCATTACTTGGAGTTACATAATGTATAGATAGTACTTGGAAGTGTGTTTGAAGGGAGAATACGTGGAAGAACACATTGGTGAGACTTCTGTTTTGGTCATGTTCACATGCGCTTTTGCTTAAAGTTTGCGAAGGGTGGATATGGAATATTATAATTTGGGTATAACTGTTTTATACTGTAACAAACAGAAATTAGATGGTGCGAGATATGCTACATGATCAGGAAAATTGTGGACCAAACACAGGCTAGATTGTTAATATTGAGTATTGAGGGATTCAATGTGCAATGTTAGTTAAAGACACTAGGTGGCAGCATGTAAAATGGCAAATAGATGCTTCAGATGAAAGGCTATACCCAAATTCTGTGCATAGAAcaagtttttaatatatgtatttccaaACTTGAaaagtttgaatatatattaatttaaatacgaTGGCTATACATTATTAAAGGAGTCCAGGAAGACGCACTGTGAAGTAGATCtgctttttttgtcttttacatCCATGAAAGACctgcatgataaaataaaaagaatccTCATATAGTATGAAATCCACTATTAAAACAATAGTAAAGGAAAAGCCAAAACCGAGACTTGTCATCGGGCATACAAATCTGCATCAATTTAATaagttaaacaaaatgcaaaaaacatgaGTTTATACTCTGTATattacatcattattttttatatgcatCTTTGGTGGCTTTCACAATTGGATTGTTTATAAAATCCACAAGTCTTCCAGAAACatgtaaaatctttaaaatataggctatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45759 lncRNA downstream 83006 40646473 ~ 40646687 (-) True G36605
TU45744 lncRNA downstream 325110 40404251 ~ 40404583 (-) True G36590
TU45736 lncRNA downstream 394137 40335143 ~ 40335556 (-) True G36582
TU45727 lncRNA downstream 538332 40189820 ~ 40191361 (-) True G36576
TU45719 lncRNA downstream 605706 39972756 ~ 40123987 (-) False AMCG00019731
TU45814 lncRNA upstream 235874 41002062 ~ 41002677 (-) True G36650
TU45816 lncRNA upstream 244012 41010200 ~ 41010403 (-) True G36652
TU45865 lncRNA upstream 962976 41729164 ~ 41729412 (-) True G36699
TU45876 lncRNA upstream 1183925 41950113 ~ 41950329 (-) True G36710
TU45888 lncRNA upstream 1271347 42037535 ~ 42037735 (-) True G36722
AMCG00019731 mRNA downstream 685402 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019726 mRNA downstream 899106 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019727 mRNA downstream 989450 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 1001403 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 1224131 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019738 mRNA upstream 781730 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 808088 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019741 mRNA upstream 1305122 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019743 mRNA upstream 1622792 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019744 mRNA upstream 1648422 42414610 ~ 42442771 (-) True AMCG00019744
TU44832 other downstream 5674249 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 6207423 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 8496295 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 11044391 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 11083730 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 1777928 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 1878136 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 2532043 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 2811121 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 4130311 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile