RNA id: AMCG00019736


Basic Information

Item Value
RNA id AMCG00019736
length 864
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00019736
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 41348441 ~ 41358215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATCCAGACTATAAGTGCTGTCGACAAAGACGAACCACCCAGTGGTCACAGGTTTTTCTTTGCGCTCACTCCGGAGGCAGCAAGCAATCTAAACTTCACCCTTAGAGACAACAAAGACAACACTGCCTCTATTCTGACTAAAAGAAATGGCTTCAGGAGACAGGAGCAGTCTCTCTACAAACTACCCATCCTAATCGTGGACAGTGGAAGTCCTTCCCTGAGCAGCACCAACACCTTGACAATCAGAGTGTGCGACTGTGACCCGGAGGGCATAGCACAGTCCTGCAATGCTGAAGCATACGTGCTACCAGCCGGACTCAGCACGGGGGCCCTCATAGCTATTCTGGCTTGCGTGCTAACATTGCTAGTGCTGGTGCTGTTGATTGTCACCATGAGAAGGAGGAAGAAAGAGCCCCTGATATTCGATGAGGAAAGGGACATCCGAGAGAACATCGTCCGCTATGACGACGAAGGAGGCGGGGAGGAGGACACCGAGGCCTTCGACATGGTGGCGCTGCGGAATCTCAATGTCATGAGGGACACTAAGGCGCGCCGGGATGTGACTCCAGAGGTGCAGTTCTTCTCCCGGCCTACTTTCAAAACCCTCCCCGACAATGTGATTTTTAGAGAGTTTATATGGGAGAGACTAAAGGAAGCGGACATAGACCCCTCGGCTCCTCCCTATGACTCCCTGCAGACCTACGCTTTCGAGGGCAACGGCTCTGTGGCGGAGTCGCTCAGCTCCTTGGAGTCGCTGAGCACGGACTCGGACCAGAATTATGATTACCTCAGCGACTGGGGACCGCGCTTCAAAAAACTAGCAGACTTGTACGGAAACAGTGAGAGCAATATATTCTCTTAG

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45818 lncRNA upstream 205867 41142190 ~ 41142574 (+) True G36654
TU45808 lncRNA upstream 477126 40871108 ~ 40871315 (+) True G36644
TU45758 lncRNA upstream 701754 40646448 ~ 40646687 (+) True G36604
TU45755 lncRNA upstream 768346 40579888 ~ 40580095 (+) True G36601
TU45752 lncRNA upstream 858326 40489916 ~ 40490115 (+) True G36598
TU45864 lncRNA downstream 370947 41729162 ~ 41729411 (+) True G36698
TU45875 lncRNA downstream 591910 41950125 ~ 41950350 (+) True G36709
TU45882 lncRNA downstream 674800 42033015 ~ 42033516 (+) True G36716
TU45886 lncRNA downstream 678944 42037159 ~ 42037370 (+) True G36720
TU45910 lncRNA downstream 855971 42214186 ~ 42270922 (+) True G36744
AMCG00019735 mRNA upstream 13238 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019737 mRNA upstream 35528 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019732 mRNA upstream 618775 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019733 mRNA upstream 645519 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019729 mRNA upstream 1429420 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019740 mRNA downstream 333356 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019742 mRNA downstream 1016253 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019745 mRNA downstream 1150387 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019746 mRNA downstream 1187232 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019747 mRNA downstream 1199084 42557299 ~ 42572080 (+) False AMCG00019747
TU45249 other upstream 3832414 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 5048894 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 5284596 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 5284596 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 6497118 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 1198325 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 1602441 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 1903679 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 1972077 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 2694859 44053074 ~ 44056603 (+) True G37105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000136_01961834_02044196.mRNA True 3024 mRNA 0.49 14 CI01000136 1961594 ~ 2044196 (-)