RNA id: AMCG00019739


Basic Information

Item Value
RNA id AMCG00019739
length 405
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00019739
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 41574276 ~ 41576305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAATCTGATTTTGACAAAGGAAACTTTtctataatgtacattttatctgGAGAAGGTGCAGGAGACGTCTTTAGAATTGACGAAGACTCGGGTGAAATTTACACAATGAAGAAGTTAGACCGAGAGAAGAAAGCTTTCTACATTTTGCGAGCACAAGCCATTGACAGACGCTCCATGCAGCCTGTAGAACCTGAGTCAGAGTTTATTATCAAAGTTCAAGACATCAATGATAATGTTCCAGAGTTCCAAAACAAACCCTACGTGGCTTCTGTACCAGAAATGTGGACCACAGTCATGCAAGTGACAGCCACAGATGCTGACGATCCCTCTTATGGGAACAGTGCCAGACTGATCTATAGCATCCTGCAGGGTCAGCCATACTTCTCTGTGGAGCCCAAGACA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45816 lncRNA downstream 563873 41010200 ~ 41010403 (-) True G36652
TU45814 lncRNA downstream 571599 41002062 ~ 41002677 (-) True G36650
TU45759 lncRNA downstream 927589 40646473 ~ 40646687 (-) True G36605
TU45744 lncRNA downstream 1169693 40404251 ~ 40404583 (-) True G36590
TU45736 lncRNA downstream 1238720 40335143 ~ 40335556 (-) True G36582
TU45865 lncRNA upstream 152859 41729164 ~ 41729412 (-) True G36699
TU45876 lncRNA upstream 373808 41950113 ~ 41950329 (-) True G36710
TU45888 lncRNA upstream 461230 42037535 ~ 42037735 (-) True G36722
TU45906 lncRNA upstream 494757 42071062 ~ 42074667 (-) True AMCG00019741
TU45959 lncRNA upstream 876360 42452665 ~ 42452940 (-) True G36787
AMCG00019738 mRNA downstream 10892 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019734 mRNA downstream 808088 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019731 mRNA downstream 1529985 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019726 mRNA downstream 1743689 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019727 mRNA downstream 1834033 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019741 mRNA upstream 495005 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019743 mRNA upstream 812675 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019744 mRNA upstream 838305 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019748 mRNA upstream 915759 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019749 mRNA upstream 957599 42533904 ~ 42542454 (-) True AMCG00019749
TU44832 other downstream 6518832 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 7052006 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 9340878 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 11888974 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 11928313 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 967811 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 1068019 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 1721926 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 2001004 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 3320194 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile