RNA id: AMCG00019741


Basic Information

Item Value
RNA id AMCG00019741
length 2961
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00019741
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42071062 ~ 42078932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTTATGTTCGGGGGGCGGTTGGTGGTTTTCTTATCATTTCTGGCGTTAGGAGCTGCCTTCTCTGGCGTTTTTAACTCTTCTGATAAAGATGCTTTTAATGACGACCTGGAGCACAGTAAACTCATAGATTACAATACAATTGAGCTGTGGACTCACATGGGTGCCAACCTGCACCCCAACTTATATTTCGACCCCGAGGATGTCCAGTCCTTGAGACAAAAGTCCAGCACCACTCACAGCCACCTCTTTAAGATCATGCGGACTGCAGTTATGTCCATGCTCTCaaatgcacagctgtttctgccTCCTGTGAAACACGAGGACTTCAGCTCCAAGTGGAATGAAATATATGGGAACAATCTGCCCCCTCTTGCGCTGTACTGCCTCATCTGTCCGGAGGACTCCGCCGCCTTTCAATTTCTTTTGAGATTTATGGACAGGATGGCAGAGTATCCAGACTGGATGGTTACAAGTGCGCCCAACGACGAGGTTCCCATAGCTCACTCCTTAACTGGTTTTGCCACCGCCTTTGACTTTGTTTACGCCTCTCTGGACATGCACCGCAGGGACAGCTACCTTAAGAAAATCCGTTCTGTTACTGATGAATTGTATGAGCTGTCTAAATTCAGAGGGTGGGGCAAACAGTTCTTGCAAAATCACCAAGCCACTAATATTTTAGCAATACTTATAGGTGCTGTAGTGGCTGGCGTGCACAATGATCCAGAGACTATGATATGGAAACAGGTGGCTGTAAACTACATGGAAAAGACCATGTTTCTGTTAAACCACGTTATAGACGGATCCTTAGATGAAGGGGTGGCATATGGGAGCTACACTGCCAAATCCATCACACAGTACGTGTTCCTTGCACTGCGTCACTTTAACATCGACAACACGCAGAACAACTGGCTCAGAGAAcacttttggttttattatgcCACTGTGCTGCCTGGGTTTCAAAGGAGTGTGGGCATAGCTGACTCCAATTACAACTGGTTCTATGGGCCTGAGAGCCAGCTCGTGTTCCTGGATGCTTTTGTGTTGAAAAATGGCACTGGAAACTGGCTGGCACAACAGATCAGAAAGCACAGACCCAAAGACGGCCCCATGGGACATTCTTCTGCCCAGCGGTGGACCACACTTCACACAGAGTACATCTGGTATGACGCCCATTTGACCCCCCAGCCTCCCAGTGGATCTGGCACAGCAggaatgcacattttctccaaTTGGGGGGTTGTGACTTATGGCGCTGGGATGCCCAACAGCCAGGGAAACACGTTCGTCTCCTTCAAATCGGGCAAACTGGGTGGTCGTGCCGTCTATGACATTGTTCACGCCAAGCCGTACTCCTGGATTGATGGCTGGAACAACTTTAACCCTGGCCACGAGCACCCCGATCAAAATTCCTTCACCTTTGCCCCTAATGGACAGGTCTTTGTGTCCGAGGCCCTGTATGGACCCAAATACAGCTACCTAAACAATGTCTTGGTCTTCGCGCCTTCCCCTACTAGCCAGTGCAATGAGCCCTGGGAGGGCCAGCTTGGGGAGTGCGCCAAGTGGCTCCGCTGGACAGACAGTGACGTTGGGGACACAGCTGGGGAGGTCATAACGGCCTCCTCTCACAAGGACATGATGTTCGTTAGTGGGGAAGCGGTGGGCGCCTACTCCTCCGCCATGAAACTGAAAAGCGTCTACCGTGCCCTGGTCCTGCTCAACTCCCAGACTTTGCTGGTGGTGGATCACGTGGAGAAACAGCAGGATTCCCCAGTGAATCTGATCAGTGCCTTTTTCCACAACCTGgacattgattttaaatacgTCCCCTACAGGTTCATGGATACATACAATGGAGTCCTGATGGACGTCTGGGATGCTCATTACAAAATGTTCTGGCTCGATCACCGGGGCACAAGCCCTGTCACTAGGATACAGGAAGCAGAGCAGGCGGCAGAGTTCAAGAAGCGTTGGACGCAATTTGCGAATGTGACTTTTCAGATGTCAGGTACAGTCAAAAGGATGGTGTACGTACTCCATGGCCCTTATGTGAAACTTACCAGCTGCAGGTTTGTGGACGACAGCAAACACGGGCTCAGGCTTGCAGTCACCATCAATAACACAGAAAAAATTGTCTCCATTGTGACAAACTACAAGGATATAGGCGCTCGGTTTAGTTACCTTGGCTTTGGTGGGTTTGCCAAAGTGGAGGACAGGAATCAGGTGACAAGATTTGGTTTGGGAACACAGCTTGTGCCAAAACAAAGTTCAGCCGACAGCAAAGTGTTTGATTTTGGATTCATTGTTAACTTGATAGCAGGAGTGACGCTCTGTGTTGCCATTGGATTTTTGACTCTGCAGCGGAAATTTTATATTTGCTTCAGCAAGCTTATGCGCTATGCCCTCATTACAGTTCTGCTCCTCTGGGTTGTTGAGCTGCTGTTTGTTTCCAATAGCTGCGATGAGCTTCTCTGTGGTGTGAAATGGGGAGCTGCAGAGCCTGAGGCAAACATGCAGTCAAAACATTCCAGTCAGCAACCTTTACCAACAGTCATCATAACCTCCCTCCCCGGTTCAGGAGGAGAAATTTTAAAGCACCTCTTTGACAACAGTTCTGATTTTATCTACATTAGGATCCCCACTGAGTACCTGGACATCCCTGAGACAGAGTTTGAGTTTGACTCACTCGTGGACGCGTGCGAGTGGTCTAAGGTGAACGCTGAGAATGGACATTTCAGAATTGTGCAGGGCTGGTTTCAATCCCTGGTCCACAGCACCAAGCTGCACTTGCAGAACATCCAGCTGTACGAAGCAGGCAGAGGCAAGCTGTATCAGAAAGCCAGCCCCTtgaaagagaagaggagaaggaTTCGGAGGAAAGAGCCCTTGAATGAGCAGAAAGGGAGAGAGGAATCggaggagaaagaaaagtgGTTCCAGTACCCAGCTGACTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45888 lncRNA downstream 33575 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 120981 41950113 ~ 41950329 (-) True G36710
TU45865 lncRNA downstream 341898 41729164 ~ 41729412 (-) True G36699
TU45816 lncRNA downstream 1060907 41010200 ~ 41010403 (-) True G36652
TU45814 lncRNA downstream 1068633 41002062 ~ 41002677 (-) True G36650
TU45959 lncRNA upstream 373733 42452665 ~ 42452940 (-) True G36787
TU45980 lncRNA upstream 444231 42523163 ~ 42528691 (-) True G36805
TU46018 lncRNA upstream 503211 42582143 ~ 42582473 (-) True G36841
TU46063 lncRNA upstream 683599 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 769525 42848457 ~ 42848686 (-) True G36894
AMCG00019739 mRNA downstream 495005 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019738 mRNA downstream 507926 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019734 mRNA downstream 1305122 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019731 mRNA downstream 2027019 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019726 mRNA downstream 2240723 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019743 mRNA upstream 310048 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019744 mRNA upstream 335678 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019748 mRNA upstream 413132 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019749 mRNA upstream 454972 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019752 mRNA upstream 482637 42561569 ~ 42580384 (-) True AMCG00019752
TU44832 other downstream 7015866 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 7549040 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 9837912 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12386008 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 12425347 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 465184 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 565392 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 1219299 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 1498377 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2817567 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032349 True 3579 mRNA 0.44 2 NC_007113.7 27311863 ~ 27319914 (-)
grasscarp (Ctenopharyngodon idella) CI01000326_00546783_00550424.mRNA True 5741 mRNA 0.44 1 CI01000326 545563 ~ 551303 (-)