RNA id: AMCG00019742



Basic Information


Item Value
RNA id AMCG00019742
length 2935
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00019742
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42374468 ~ 42385648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTCAACATGCTACTTGTCTGCTCTGATTGCAAGCCCACGaCACAATTCCGGCACAAGAGAAAGATCAAcagcagaatagaagatttcATGGCTCTTACTCGAGGCTTGGATGTACTGTCCATCAAAGTGCTGGAGGACGACTACGAGAGTGCGATGTTTGTGGTTCAAATCAAGTGCCGCAATCCAGTGCTGCTGGAGTACTGgcagaagaaagtgtttttctaCAATGGCCAGGTGCAGCAGACGGACACCATTTGCTCCGAGACGATGGACAGCATGGAGTTTGTGTTGCGAGTCCTCCACCGCTCCGAGACCTTATCCAACAGTGACTACTGGAGTCCCTTCATAGTCGCCATTTGCCTGGACGCTCTGTACTTTAACTACCAGCTTCCATCGAACATCATATGGAACGGTAACATTAAACAAGTCATGAAGGAGAACACGTTGTTCTTGACCAAGTGAGAAGCCCAGAAAGCACACACCACGTCTGGAAGAGTGCCCGGGAGCCCACTGCCTTTCTCGAGCACATTCCAAAAGCTGCGATATGTGTTTATCAAGACTGCGCCACCTGCGAATACAGAAGTGCCTGCAATTCggtggaatataaataatttcataGTTTGAGgacactgacatttttatttcattttttgaatcACTTGGCTTGAGATAAAATATCTCTGGATGTCAAATGATTTTAAAACGGCAAAACCGCATTGGATTTCTGCTGCTGAGACTTAACAGGCCAGTGTTCAGTTTTGTTCCCACGTTATGTTAGGGAACCAGGAGACATCAGAAAGTGCCttgaaatgaaagcattgcTCTATAACAAACATTGTTTAATAACCTGTTCTGGTCCTGGGAAAATGAGACCATGCAATGGAGAATACTCCCTAAAAGGCACTGCTAAAAGGTCCAGGTTGTGAAAGTGGGAGACCATAGAGTGCTTTAATATTCTTTTTCTTGGCACTGTACCAGAAAGcattatgaaatataatttttagggagggagaaaaaaaaaaaaaaaatctcacgtTTGGCAgttaaaaggaagaaaaagaagaaagcagcAGTATTACAAGTATGCTTCTAGGTGCGCATTTTCTATGTATTCttagaaggggggaaaaaatttACTATCGGGGGGGTGAAggttgttttttcagttatgAATGATGTAAATCAGTGGTGGACAGCCCTGGTCTAGGGGAACCACGGCCCTGCACATTCAATAGCACCTGTAAACCATCAATAAATGACACCTGGGCAAGCAGACAGGTCTAGTTAAGCAGATGACTGATCCAATTCAGCCACACAGACCTGAGTGGTGACGATGGGCAGAGGGCATGGCAGTTTGGACAGACCAGCCACAGGGGACTCACATCACAGACTGAGTCTCATAACTGCAAGACATCACAATACGAATGTGCAGGACAACCAACAAgcgaaaacacaaacaaaacaacaacaaaaaactatgtGTGAACATCAGTCCTCCTGACACTGTCcttgtgtattattaatgtagtGTTTTAGCAAGTATcggcagaaaagaaaacagaaaaatagtGATTGAGAAACTTTCATCTCTTTTCATTGATGGCTCAAACTAAATGCAATAGTAGAAATGTTACATTGTATCAGTAAGTGGTCCATACCATAAGTTTGATACAAAATGGAACAAGCAGATTTTCTTTAagaatgaatgtaaaaaatgaatgcaggaaataaaaaaaatactctttATAAGAGTGCACTTGAGAGCAGCGAACATGGTGATTGACCATGAATATAACTGCTCCTGTTCAAAACAAGCGGAGTTCCACAGGATTCACGATGAAAGAGAGGTGATAACCATCTCTCTTGATCTGAACTAATGTTATTATGTCAGTAAGTTATACATATTATAGGTTAACTAACATAGAAAGACCATCATACAGTAAAATCTAACATTGACCTTGTATAACtaacaaaaacagacttttaattaACAGCCAGCTGTGCTTAACTTCCATGGAAgtgtttaaaacacattctgaTGGATTCCTATGCAATTGAACAAAGAATTTGAATCCGTCTTTTTTCTATGATTTCCATGTGATTTGTATTTGCAACTGGAACTGAAAGGACACCATCAAAAATAGAACAAACGGTGACTTAACCAAGAGACAATTCGCATTTTCAACCCATTGAAGTCCTACTCGGTGTGAAATACTTCTTCGAATGGACAGGACTGTGTGAGTAATgcagaaaacaactaaaaccaGCTTAACACACCTGATTGAGTATTTGGGTCTAAATGCTTCACACTTGGGAAGTGTTCCATATGTTGACAAATATTAgaagctacatttaaaaaaggagtTGGAGATTTGACCTAATTACATAGTATTCACCAATACAGAAAATGagtcacctttttttttattttataattactgtattttgtctCCAAAAGAAACACACTACTGCAATACCCTTTTAcgattttttttacagttaaattTAATTGTTTAGTGTGTACCGTGTCCAAATTCAGTCCAAAGAAATACAATCCAACCTCCTTTCCTTTTCAGACAAATTTTACTCCTTAATTTTCACGATGGCTTCAAATATTGACACTTCTGCTTCAACATCTGTCACGATTTACATCGCCGGTCTCTGAACTAATTATGATGTAACTTTAGGGGATGactgtaattattaaaaaaaattatgtatttaactgAAGAACAACCccaataaaaaattaaaataaatggtttgagCATAATATAAAAGAGTGCAGGTACTACAGCgtgatttttttcaaattaatcaaatcgTTTCAGTCGTTTGTACTTTCCTAACACCTGTAGTCTAAGAACTAAAATTTTAGAAGACTTCAGGTACATATTAGTGCACGAAGTGTATTTGAAAGAGGCCACAGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45920 lncRNA upstream 62296 42311548 ~ 42312172 (+) True G36754
TU45910 lncRNA upstream 103546 42214186 ~ 42270922 (+) True G36744
TU45886 lncRNA upstream 337098 42037159 ~ 42037370 (+) True G36720
TU45882 lncRNA upstream 340952 42033015 ~ 42033516 (+) True G36716
TU45875 lncRNA upstream 424118 41950125 ~ 41950350 (+) True G36709
TU45982 lncRNA downstream 146369 42532017 ~ 42532709 (+) True G36807
TU45992 lncRNA downstream 158577 42544225 ~ 42544526 (+) True G36816
TU46019 lncRNA downstream 196872 42582520 ~ 42582758 (+) True G36842
TU46021 lncRNA downstream 199210 42584858 ~ 42585152 (+) True G36844
TU46022 lncRNA downstream 217161 42602809 ~ 42603022 (+) True G36845
AMCG00019740 mRNA upstream 507991 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 1016253 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019735 mRNA upstream 1039265 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019737 mRNA upstream 1061555 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019732 mRNA upstream 1644802 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019745 mRNA downstream 122954 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019746 mRNA downstream 159799 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019747 mRNA downstream 171651 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019751 mRNA downstream 239082 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019750 mRNA downstream 268999 42654647 ~ 42662493 (+) True AMCG00019750
TU45249 other upstream 4858441 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6074921 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6310623 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 6310623 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7523145 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 170892 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 575008 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 876246 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 944644 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1667426 44053074 ~ 44056603 (+) True G37105

Expression Profile