RNA id: AMCG00019744


Basic Information

Item Value
RNA id AMCG00019744
length 1635
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00019744
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42414610 ~ 42442771 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCGGCGGTGTTTGAGGGCACGTCTCTGGTCAACATGTTCGTGAGGGACTGCTGGGTCAACGGCGTCCGGCGGCTGGTCATCGGCCGgcggggggaggaggaggacttCTTCGAAATCCGGACCGAGTGGTCGGACAGGAACATCCTGTACCTGCACAGGAGCTGCTCGGACCTCGGGAGGCTGCTGAAGCGGCTGCTGGAGTGTTTCCCGGAGGACCGGGGCGACCTTACCAAGGAAACCGACATTACAGATACAAAGCAAAGACTGGTGAAGATCAAGGAGGCCAGTGACATAGAGGCCAGGCTGAATGAAGTGGAGaggcttttgaaaaatgtcataAATATGCCCTGGAAGTATTCTAGATCGGAAGTTGTCCTCACCTTCTTTGAGAGgTTCGAGAATGGGAGCGAGTTCACCCCCGAGCCTGAGAACAGTGACGATGACCCAGAAGCCTACGTCACCAACCTGTCCTACTATCACCTGGTTCCCTTCGAGACGGATATCTTGGATGTGAACTGCATGACTAAGGGCTACACTCagcaatatggctgccaaaggATCTCTCCCAAGGGTGTGGACGTCCCCGCCCACGTGCACTACACCATCGGGACGGTCATTCTGGTTGTAGGGGTCACGGGGGTCCTGGGGAACTTCCTGGTCATGTACGTTTTCTGCTGGAGCAAGAGTCTGAGGACGCCGGCCAACATGTTCATCATCAACCTGGCAGTGTCTGATTTCCTGATGTCTCTCACGCAGGCTCCTGCCTTCTTCATCACCAGCCTGAGCAAGAGGTGGGTGTTCGGGGAGAGAGGCTGTGAGCTGTACGCCTTCTGTGGGGCCCTGTTTGGGATCTGCTCCATGATCACGCTGATGGCCATCGCAATGGAACGGTACTTGGTGATCACACGGCCGTTGGAGTCCATTGGGGTGATGACGCTTCAGAGGGCTGGGCTGATCCTCGCAGGGGTCTGGTGCTACTCCTTGGGGTGGAGTCTCCCGCCCTTTTTCGGCTGGAGCGCCTACGTCCCTGAGGGTTTGCTGACGTCCTGCACATGGGACTACGTGACATTCACCCCTTCAGTCCGTGCCTATACCATGCTCCTCCTTACCTTTGTCTTCCTGATCCCGCTGGCGGTCATCATGTGCTGCTACTTCTTCATCTTCAAGGCAATCCAGGTGGCGAACCAGGCCATGCAGAAGATCAATGGAGGGGAATCCCAAAAGACGTACGAGAAGATGAGGAATGACTGGAAGATGGCCAAAATCGCGCTGCTCCTGATCCTGCTGTACGTCATTTCCTGGGCGCCTTACGCTGCCGTAGCTCTCACTGCTTTTGCTGGCTATGCCCACCTCCTGAGCCCGTACATCAATTCTGTGCCGGCTGTCATCGCCAAAGCTTCGGCCATCCACAACCCTATCATCTATGCCATCACCCACCCCAAGTACAGGCTCGCCATTGCCAGATATGTCCCCTTCCTGCGGGTGCTGCTCAGGGTGCCCAAGAAGGATGTACGCTCGATGGGCAGCTACTCCTCCGCCCGCTGCTCCACCGTCTCTAGCCAGTCCTCCAACCTCAGCTCCACCAACCCCTGCTGTGAAAAGCCGCCTCTCCTCCACGTCGGACAGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45906 lncRNA downstream 339943 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 376875 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 464281 41950113 ~ 41950329 (-) True G36710
TU45865 lncRNA downstream 685198 41729164 ~ 41729412 (-) True G36699
TU45816 lncRNA downstream 1404207 41010200 ~ 41010403 (-) True G36652
TU45959 lncRNA upstream 9894 42452665 ~ 42452940 (-) True G36787
TU45980 lncRNA upstream 80392 42523163 ~ 42528691 (-) True G36805
TU46018 lncRNA upstream 139372 42582143 ~ 42582473 (-) True G36841
TU46063 lncRNA upstream 319760 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 405686 42848457 ~ 42848686 (-) True G36894
AMCG00019743 mRNA downstream 8300 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019741 mRNA downstream 335678 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019739 mRNA downstream 838305 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019738 mRNA downstream 851226 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019734 mRNA downstream 1648422 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019748 mRNA upstream 49293 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019749 mRNA upstream 91133 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019752 mRNA upstream 118798 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019754 mRNA upstream 253058 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 532597 42975368 ~ 42976338 (-) True AMCG00019756
TU44832 other downstream 7359166 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 7892340 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10181212 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12729308 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 12768647 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 101345 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 201553 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 855460 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 1134538 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2453728 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile