RNA id: TU46002



Basic Information


Item Value
RNA id TU46002
length 921
RNA type TUCP
GC content 0.61
exon number 3
gene id AMCG00019747
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42556540 ~ 42572080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggatgGGAAGGCTTTCCAGCAGCATTTCATACATTCAGAGCTTCACCGGGGTGCACTGAGCAGCTGGAGAGAGGCAGCACACAGCCAACCATGAGGGAAATAGTTCACATACAGGCTGGCCAGTGCGGCAACCAAATCGGAACAAAGCCCAGAAGTATGTTCCCCGAGCCGTGCTGATTGACCTGGAGCCGGGGACGATGGACAGCGTCCGGTCTGGACCGTTTGGACAGCTCTTCAGACCCGACAACTTCATTTTCGggcAAACAGGTGCGGGGAACAACTGGGCAAAAGGCCACTACACAGAGGGGGCGGAGCTTGTGGATTCAGTGCTGGATGTGGTGAGGAAAGAATGCGAACACTGCGACTGCCTGCAGGGCTTCCAGCTCACCCACTCGCTGGGCGGGGGCACGGGCTCGGGCATGGGCACGCTGCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAATACCTTCAGCGTCATGCCCTCGCCCAAGGTGTCAGACACGGTGGTGGAGCCCTACAATGCCACCCTGTCGGTGCACCAGCTGGTGGAGAACACGGACGAGACCTACTGCATCGACAATGAGGCGCTGTATGACATCTGCTTCCGCACACTGAAGCTCACCACCCCCACCTACGGTGACCTCAACCACCTGGTGTCCGCCACCATGAGTGGGGTCACCACCTCGCTGCGCTTCCCTGGCCAGCTCAACGCCGATCTCCGCAAGCTGGCTGTTAACATGGTCCCCTTCCCCCGGCTGCACTTCTTCATGCCAGGCTTTGCCCCCCTGACCGCCCGGGGCAGCCAGCAGTACCGCGCCCTCACGGTGCCTGAGCTCACCCAGCAGATGTTCGACGCCAAGAACATGATGGCCGCCTGCGACCCGCGCCACGGCCGCTACCTGACGGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45992 lncRNA upstream 12014 42544225 ~ 42544526 (+) True G36816
TU45982 lncRNA upstream 23831 42532017 ~ 42532709 (+) True G36807
TU45920 lncRNA upstream 244368 42311548 ~ 42312172 (+) True G36754
TU45910 lncRNA upstream 285618 42214186 ~ 42270922 (+) True G36744
TU45886 lncRNA upstream 519170 42037159 ~ 42037370 (+) True G36720
TU46019 lncRNA downstream 23584 42582520 ~ 42582758 (+) True G36842
TU46021 lncRNA downstream 25922 42584858 ~ 42585152 (+) True G36844
TU46022 lncRNA downstream 43873 42602809 ~ 42603022 (+) True G36845
TU46031 lncRNA downstream 66289 42625225 ~ 42625818 (+) False AMCG00019751
TU46114 lncRNA downstream 309466 42868402 ~ 42868634 (+) True G36895
AMCG00019746 mRNA upstream 3867 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019745 mRNA upstream 29332 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019742 mRNA upstream 170892 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019740 mRNA upstream 690063 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 1198325 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019751 mRNA downstream 65794 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019750 mRNA downstream 95711 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019753 mRNA downstream 158997 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019755 mRNA downstream 401741 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019758 mRNA downstream 703008 43261944 ~ 43271192 (+) True AMCG00019758
TU45249 other upstream 5040513 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6256993 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6492695 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 6492695 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7705217 34840316 ~ 34851323 (+) True AMCG00019641
TU46131 other downstream 401720 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 702958 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 771356 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1494138 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 2720519 45279455 ~ 45339619 (+) False G37372

Expression Profile