RNA id: AMCG00019748


Basic Information

Item Value
RNA id AMCG00019748
length 3460
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00019748
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42492064 ~ 42507976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTACTACTTCCTGGAAGTAGTAAATATGGTCTTCTGTGAATTTCTAATCAATTATAcgatattatattttctttaaaaccacCAACGACAAATCAGTAAGGTTAGTTGGACGGCTAATACTGCTATTAACACTTCGATAAAAGtTGTCCCTCTTCTCTGAATGCAGAGTGACGATGAGCCAGTTGAAATATGTCTACCAGGACATCCAACCAGTGACTCTTCACATCCCTGAGGAGAGCACCACCTCCAGGCTGTACTCCAGCATGGTGGAAGGGGTTGGAGGGCAGGTCTCTGGGCTTGTGGAAATGTTCCTTGTGGAGGTTTACCGCTGCCGAGTCTGCCAGTTCACCAGCAGCCAGAAGAGCAAGATCAGCGCCCATGTGATAAACCGGCACGAGCTGGGGAGGACGTGTCACCCTCTGACTTGCCTGGAGAAGGATGAGGTGGGTcaacaggaagaggaggagctggATCGGGACTCCGTCTATGGTATGGAGGACCAACTGCATCCAGATGGCAAAGACAACGATGACCACATGGACGTGGGCCTGGAACGAGTGTCCTTCCTGCTGCCCATGTATGGCATGCTGCACAACATCAGCCCCCAGTCATGTGACATGAGCCTCAGCACCAACAGCGATGGCCTCCATGTAGCCCACACCTGCGAGGTGACCACTCTGTTTGAGGAAGGGGAAGAGGCAAGTCAGTTCCGATTGGAGGATCCTGGTTCTCTGTCATGTCCAATGGGCTCGGCCGCCGACTGCACCAGCGAGGACCAGGATGATGAGATGGCCCAGTCGGCTCACCTCATGTCCCTGGGACTGTGTAGGATCTCCAGCATGAAAGCCCAACCCATGAACCCGGAGTCAGGGAGGGCCCCAGAGGCAACAGACAGCCAACCCCCAGAAAAGAGAGCTCCCTCCCCACTCCCAGGCTTCCAGAAGAACTCAGACCACCAGGAGACCCTTTTGTGTCACAATCTGGACCTGGCCTCCAAAACTCTGCTGGAGGTGCCGCAGAAAGACCACGAAGTAGCACAGGGCTCCAGGGCCCTACCGGGCGACCACTCTGCATCAGAGTGGAGGCCGACAGAGAGGCCTGCTCAGGGGCAAGCTAGGGAGTGCAGGGCCCACCTGTGCGAAGTGTGCCAGAGGCAGTTCAAGAGCGTTAAGTCCCGGGACCACCACCAGAGGAGACACGGGAAGGAGCTACCGGTGGCCCAGTATAAATCGTGGAAGAAAGTCTACAAGCATCTGACATCTCAGCATCCGCCAGACGAAGAGGTGGACAAAGACCCTGAATGTGACAAGGGATTTAGCCGAATACACCAATCAACAAGCAACACGAGATTGGCCACTCAGAGCCGTCCTGGCTGTTTGAAGCGGCTCCTGTGTGGGGAGCAGTTCCGGAGCTGGCCAGATGGGGAGCTGCACGGCGAAGCCCGaaagatgaaaaggaaaaagaagaggAAGGCTCAGAGGTCATCACAGGTCCAGCATGGCAGGGGCAGCGCAGTGCagacagagcaagagagaacCAGCAGcaacaggaggaggagggcagggAAGGAGTTCCCGTGCTCGCAGTGTGGCAGGAAGTTCTCCTCCAGGCTGGCCCTGCGCAGACATATGGGGATCCACAGTGGGGTGAAACCGTTTGAGTGTGAAGACTGTGACTACAAGACCAGGTTGAAGGCCTCGCTCATACAGCACATGCGAGTTCACACAGgtgAGAAACCATTCAAGTGCAGCCAGTGTTCGTACGCCTCCATCGATGGCAGCTCCCTGAGGAGGCACTCCAGGATACACACCCGTGAGAAGCCCCACCACATTCAGAAGAAGAGCCTGGACCTGCACGTGCGCAGACACCACACTGGGGAGGCCTTCTTCTGCCACCTCTGCCCTTATTCCTCCCCGGACAAGCAGCTGGTCCACAGGCATGTTAAGAGGCACCACTCTGGCCTTGCAGGCAGTGCCAAGCCCCCcactgccctctctctccaggcagACCAGTCCTCAGAGAGCTCCTGACCTCTGTGGGCCACTCACTCCCGCGCGCCTCTTGTCGAGATTGGAAACGGCCCTGTAAGACTGTATCCCCCATAGGCTGAGAATGTAGCACGATCCGCAGCCAGAATGATGCCCTTCCTTTCTCAATGGATGCTGTCACAGCTGCTcgaaatactttatttattcaaaaacattttaggaATCCAAAAATGTTGaatacactatttatttatgtatgtatgtatgtatgtatgtatgtattgatttcatGAAACCCCCCCAATTGTGTGGCCATGGCACCAACAGCATGTGGTCCTGATGTAGCTCTCACTTGTAACACTTTGGGCTCACAGAGACCTGGTAGCCACACCCAGCTAACCACATAccattgtggcaacgttgtaATAAAGTGAGCTAAGAAACAGTATACTGAGAAATAGTATTCATAGAGTATGAAAAGATtattcaaaacaatcaaaacagtCAAAACAGTTGAGCTGTGCCTTCAGAAATTCCAGAGATGAAATGTGCAGAGAGAACAGAGAAAATTAATGACACCGTGATCTCAGGggtaatacatttctaaaaaatatttttctcacaTCATAGTTGTAAAATCCAAAACAGCCAAGCTTCAACCTCACACAACATTTCCGGAAGTATATAGCTTCGCAGTGATGACTCTGAGAACCCTGGCCAGGTTAAGCTCACCCGGCTTCAGAGGAGCTTGGGCAATTATGGGCGACCTTGGGTGAATTTCATGTCATCGTCGGTGGCGAGACAGTCCAGACTGGACCAGCGCTGACTGGAATATATGGCTCAGCCAGCAAGCAGAAGTTCTTACAGTTTGAGACACTCAGGAGCCTGAGAGCAGAGTTTTAATGGTTAAAAAGTTCAAAAGGAGTGGCTTACCAGTTAAGCCAAACACGGAGTCCAGAACAccttcttgtctgtgattggctagcTCAGAGCCTGAGTTGTACAAGATTTTCATACCGTCTTATAAATCAGCGAGAAGCTGGAACAGAGCTGCTGATGCGTGCTGTTTTTCAATCACTGGTTTTCTCACAGGCAGATAGGTATAAGCTGTTGTCATGGGCTAAAAATGTTATCAAGGAGGGAGGgcataaaaagacaaaaggctTTGTTGCATTGTTATACAGTTTTATCAGTCAATTTAaagatattcatatttgtatatgaCCATCTTGAAAGCAATATGAAGATTTAGCTGTGTATTTGATGCTTTATTAAAGTCCATTTAGCTATCGATGTGCCGTTTTTCTGCTTATGAAAATGCAGAGCTGGTTTGCTTGTCTTTAGCCCTAGGAGGGGGAAATTGGCAAGGAAGTCAAAGGCTGTGGAACCTGCTTTGTACAAATATAGATAAACACTATACTGGTAAGAAGCTGGCAGAAATCTGGAGCTCAGACAAGCTTGGCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45959 lncRNA downstream 39124 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 417397 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 454329 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 541735 41950113 ~ 41950329 (-) True G36710
TU45865 lncRNA downstream 762652 41729164 ~ 41729412 (-) True G36699
TU45980 lncRNA upstream 15187 42523163 ~ 42528691 (-) True G36805
TU46018 lncRNA upstream 74167 42582143 ~ 42582473 (-) True G36841
TU46063 lncRNA upstream 254555 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 340481 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 434266 42942242 ~ 42942499 (-) True G36907
AMCG00019744 mRNA downstream 49293 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 85754 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019741 mRNA downstream 413132 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019739 mRNA downstream 915759 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019738 mRNA downstream 928680 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019749 mRNA upstream 25928 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019752 mRNA upstream 53593 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019754 mRNA upstream 187853 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 467392 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 510133 43018109 ~ 43151658 (-) True AMCG00019757
TU44832 other downstream 7436620 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 7969794 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10258666 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12806762 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 12846101 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 36140 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 136348 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 790255 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 1069333 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2388523 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile