RNA id: TU46031



Basic Information


Item Value
RNA id TU46031
length 292
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00019751
representative False

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42624730 ~ 42627105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCAGATCTGATGACATAGATTGCTGGAGTTCCTGCATGGACAGGAAATTGGCTGGTTTGGCTCATTTACATTTGAGTGCAATCAGCTTAAAAACCAAAGAGGACAAATATTTGAACTGTGCTTTTGTCGTTGGTCTCTTTTCTTGAACAGATTTTACGCGGCTTGCGTGGTGCTCGGCTTGCAGTTCCTGCATGAGCGCAAAATAGTGTACAGGGATTTAAAGCCTGAAAATTTGGTGCTGGACTCAGAGGGCTATCTGAAAATCACAGACTTTGGTATGTGCAAGGAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46022 lncRNA upstream 22203 42602809 ~ 42603022 (+) True G36845
TU46021 lncRNA upstream 40073 42584858 ~ 42585152 (+) True G36844
TU46019 lncRNA upstream 42467 42582520 ~ 42582758 (+) True G36842
TU45992 lncRNA upstream 80699 42544225 ~ 42544526 (+) True G36816
TU45982 lncRNA upstream 92516 42532017 ~ 42532709 (+) True G36807
TU46114 lncRNA downstream 242584 42868402 ~ 42868634 (+) True G36895
TU46129 lncRNA downstream 324388 42950206 ~ 42950422 (+) True G36910
TU46161 lncRNA downstream 606538 43232356 ~ 43232646 (+) True G36936
TU46232 lncRNA downstream 833628 43459446 ~ 43550548 (+) True G37000
TU46233 lncRNA downstream 875234 43501052 ~ 43550548 (+) False G37000
AMCG00019747 mRNA upstream 53145 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019746 mRNA upstream 72552 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019745 mRNA upstream 98017 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019742 mRNA upstream 239577 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019740 mRNA upstream 758748 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019750 mRNA downstream 28829 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019753 mRNA downstream 92115 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019755 mRNA downstream 334859 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019758 mRNA downstream 636126 43261944 ~ 43271192 (+) True AMCG00019758
AMCG00019762 mRNA downstream 673260 43299078 ~ 43302976 (+) True AMCG00019762
TU46002 other upstream 66289 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 5109198 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6325678 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6561380 36046490 ~ 36063845 (+) False AMCG00019662
TU46131 other downstream 334838 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 636076 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 704474 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1427256 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 2653637 45279455 ~ 45339619 (+) False G37372

Expression Profile