RNA id: AMCG00019754


Basic Information

Item Value
RNA id AMCG00019754
length 1470
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00019754
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42695829 ~ 42715610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAGAAGCAACATGCAGTCCTTGTTCTTCATTGGCTTGCCTGACCTCCGAAAACTGTGCAGTGTAAACTTATCACTGCTCTCTGAGGCTGGCGATGGGGAGTCCAGGAACAAGCAGATTAAGATGTGCAGAGAGCTAATATTCCTTTATCCAGACCTCCTTGCTTCTCCTGTATTTGGCATATTCAGTGAAATCACAGTGATAATGGCTATTAACTTCTTCAAAACTGGGACCATTCAAGCCTTTGCTCAACGACATGGACTGCAGATGGGAGCTCCCAACATAGTGCGGCCTGGCCTTCTGCAGACCTGCCTGTCGTACTCCTTAACAGCTAAACTGGCTCCATACTGGAACAAGGCAGGGCAGCTCCTAATTGCAGGAAAGGATTTTTTAACAGAAACTGGGAGGCTAAATGCTTTGGCCAGCACAGTCCGACTTCCACCTGCAAAACTTGAAGACTTTGATATTTCTCCAAACATTGTGAAGAACTTCTACAACAACCGAGATGCTGTAATTCAGAAGCACTCCATGCCTAGCAATTGGTGTTACATATTACCCAGTATGAAGATGGGACAGATTATCAGCATCAGTCACCAGCCATCTGCAGAATGTCCATTCCAGTCGtacacagaaatgcagaaaCACTGGAACAGCCTGTACGGCTACAGGCTTCCTGTGAAGAGCGAGGCAGATGCTCTGTATTGCAGCGTATACTTTAAACCAGTGGGAGAGCGTCTTTTCACAAGCCAGCCAGCGCAGCTGTTTCCCAGGGTTAACTTAGAGAGCGTGCTCAGTGCCTTTCTTTCAGACCTGAAGAGCAGACTGCGGAGTCTTCCTGCGAACACCCCCAAAAGCGATTCCATGGGTGCTGTGCAGGAGAGGCTGCGCCAACAGGAGGGGGAATGCAGGCGCACCCAGTGCACTGTGGGGTCTGCTGAGGAACAGCCCCAGCGACTGGCACGGGCCCCACAGTCTGCAGGTGTCGGTCCTCCTGCTGCTTCCTTCCCACGGCAACCCAGTGTCCCTGAAGGCCCGCGGGACAGAAGCAGGGGATGGATAATCCCAATCTTTAAGAACAAGTCTTTGCAGCGGCACATCAACGTCACCAAGATCTTGGCAGACAGAAAGCAGCAAGCACCCACCCCAGCTAAGGCCGCTGCCTTGCAGAGGCCTGTAGTCTCAAGAGTGGGGACCACCAGGCCTGTTTTCCTACACCTACCTGCTGCTACACAGCGCTCAGGGCCACCTGTCTCTCCTTCTGCACGCACTGGCACTCTAAGCAGCCAGATTACCCAGAAGACCCCTTTCTGTAGGAAGAATCCTGCAGGGCTACATCCAGACTTTGCTCTTCAAGATCAACTCGCCACTCTCCAGGCCTGGCTGAAGATGCATGGCATTTCGGTTAAGTCCAAGGACAAGAAAGAGGATCTGGTTTCCAAGGTCATGACGTGTGTCGGTGAACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46018 lncRNA downstream 113356 42582143 ~ 42582473 (-) True G36841
TU45980 lncRNA downstream 167138 42523163 ~ 42528691 (-) True G36805
TU45959 lncRNA downstream 242889 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 621162 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 658094 42037535 ~ 42037735 (-) True G36722
TU46063 lncRNA upstream 46921 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 132847 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 226632 42942242 ~ 42942499 (-) True G36907
TU46206 lncRNA upstream 551283 43266893 ~ 43303060 (-) True G36977
TU46213 lncRNA upstream 614679 43330289 ~ 43333313 (-) True AMCG00019761
AMCG00019752 mRNA downstream 115445 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019749 mRNA downstream 153375 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019748 mRNA downstream 187853 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019744 mRNA downstream 253058 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 289519 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019756 mRNA upstream 259758 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 302499 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019760 mRNA upstream 558420 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019761 mRNA upstream 616821 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019763 mRNA upstream 654286 43369896 ~ 43399130 (-) True AMCG00019763
TU46040 other downstream 39436 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 151305 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 7640385 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8173559 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10462431 32222064 ~ 32233398 (-) True G35476
TU46211 other upstream 582621 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 861699 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2180889 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3649728 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 5176593 47892203 ~ 47901603 (-) False AMCG00019824

Expression Profile