RNA id: AMCG00019758


Basic Information

Item Value
RNA id AMCG00019758
length 2596
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00019758
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43261894 ~ 43271192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGGCCTGCCGTCAATACTTCCCACAATTTCGAGAGcagtcttttgtttgttgtttttcgtCTGACGCACTTTAATTTCTATAAACCATGTAAATTGTGGATAAACAAATCATACTAAAGCTTTTCATCCCGACTGCTGTTGGAACATAAACGGAGCCTTCTGGTCTTATGCAACAGAGTTAGTGTGTCTGCcagacaatttgtttttatgattaattttatttttcttggatgTCAGAATGGAAACTAAGCATATCCACTATCATTTCTATTCAGTGTAGTTTCCCCCTCCACCTACTTAATTCATTTGGCAGTTAAGTGCACCTTTACATATTACATCAAACCTTGGCCGAGTGTAGAcattttgacatgtttttgtaaGACGCCATAACCTGGATGAATAtcttgtgtttatctgtgtggaGCTGGCATTCCTGCCTGCCCTGGCCATCTGGTTTGTATTACGCCTGCTAGTATAAAACCGAAACCTGCATATAGCTGCCTTGCAGTGTGTAACTATGGACCGGACTGTAGCTGTCCTGCTCTTGCTGCACGGCACCCTGCTTGCCATTGCTGTGGACCACTCGCTCGATGGGCTCTCAAACTCAGTAGACCAAAATGACCTGGACAGCACAGGAGTACGGCTGGACTGCGCAAAATCGAAACTGAACGCTACGTCTGCTGGAGCCTTGCCAAGCACATCAGAGCCGGGAGCTGCCGCCAGCCTGAAGACACTGATGACTCAGGATCCGGCAGAGAAAGCCCCACCTGAAGTGACTCAGAGACGGAGGAGGCAGCTGTTGCCACGGACCCACCATGAGGCTCTACCCAATgCCCCAAGGACCAAGAGATCTCcccagaataaaaataataaaaacaggccTGAGTGCTCTTCGATGCTTGACCATCCCATACCAACGCCCCTAAGAACCAAGAGATCTCTGcagaacaaaaagaagaaagggaaaGGGAGGCCTGGGACCTACTCGATGCTTGGCAGCAGTCCCAAACCAATGCCGGTTGAAAGAACCAAGCGGAGTTTGCCATTGAAGAAGAAAGCAGCCAAGACGATTGTTTCCTGATGAGTGCGGCACACCACAAAACATGGTGCTGTACTGTCAACTAATGGTGGACGCTGCCGTCACAGTCTCTGGGATCACATTAACGCATTGCTAGGTTATTAAGACCGGGGGTCAAAACCCATTGTCCATTGGACATCTGGAGGATTGTcataatattgtaatgtatcTTGCGTTGGTAACATGGCTATCACTAATGTCTCCTTCTATTGCCAAAGGCATCCATTGatttcctctttaaaaaaaatagatgccTTATTAGATGCAATTTCCTCCAAAATGTGCCTATTAAGTACATGAACATTTTGGTGCCTTTTTTTAATCCCGGACCACATGCCAGTTGCTTTGTTAAACCGCAAATAAAACGCTACAGATTTAGACGGAGTAGTTCGAAGgaaaatattacattgcaaTTTCTTGCCTTGGCTTGATTTTGAGGATGTTGTCTCAAATAGCACAATGCTTAGGTTACAAAGCTCTGATATACATTCCTTCAATGTGAAATTCACTTTTCAAGCTTGCAATACAGCCAAATGGTCTAAAACTGTTAAAGAAGGCTGGGGTACACAGGTTTCCAATAAAGGACACAGAGCTGTATAATTGAGAGCACAAACCTGCCAGGCAGCTTATGTTGAATCCGATTGCATGAATAAAACGCTCCCCCTGAGATTGTAGTACTGCATTGAGAAGCTTGCTAGCATCTAAAACGATCACtagcatttattttgcatgcaggTCAGCTCAAAGATATGTAAGGGAGAGAAGAGTGGGTGAGAGAGCCTTTGAAAGACACCACTGAGGCAGAGCTAATGACTTCAGCCCATTAGCTGTACAGCGATTAAAAGATGCCTTTGCTTTCTGCAATGCATTGTTTAGAAGCAGTTGAACTAAGGATGGGTAGCATCCGCAAACTGCTTGTCTTTTAATACACAAGTGTATTCAGCTcttatgtctttgttttgtcgTATGTTTAATCTAACTTCAAACACACGAGCTTCCCTATAAGTGTTTATTCGATGTTCAATGGTTACAGGGAGAACATCCCTGTTCTGACCAGATAATGGCTCCCTGCATTCTCATAAAAAGGTTTGCAAACTATCAGCCGATTGCGATAGTGCTTTAAAGGTGCTAcggaaacacacacaaataaataaaattgtttatttacgTCTCtgtttccttatttgttttcatagctTGTGTTGCTGGAGGGGCTGTTTAGACACTGTGGATAGAGCTCAGTCTGGGAGGATGCAGAAGAATGCAAGTGTGGGTTTTTGGGATGTCAGTTTAGCTAACAAGCACCACTTTAGATCTCTCAGTGTGGAGGACCAAaagttaaaatgataaaaattaaataaaaaaggcagaccCACATTTAGCATATCATATTGTAATGCCACCTGTTTTCCATTCTCGCCTTTCATCAGGGCTAATTCACTTCACTTCAATTCACAACTAGCAGGTCCCTCCCAAGCCCCCAGAATCCCTCCCATCCACCTTGGTTCAGCCCTG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46161 lncRNA upstream 29298 43232356 ~ 43232646 (+) True G36936
TU46129 lncRNA upstream 311522 42950206 ~ 42950422 (+) True G36910
TU46114 lncRNA upstream 393310 42868402 ~ 42868634 (+) True G36895
TU46031 lncRNA upstream 636126 42625225 ~ 42625818 (+) False AMCG00019751
TU46022 lncRNA upstream 658922 42602809 ~ 42603022 (+) True G36845
TU46232 lncRNA downstream 188254 43459446 ~ 43550548 (+) True G37000
TU46233 lncRNA downstream 229860 43501052 ~ 43550548 (+) False G37000
TU46252 lncRNA downstream 305056 43576248 ~ 43577257 (+) True G37011
TU46314 lncRNA downstream 643000 43914192 ~ 43914819 (+) False G37068
TU46315 lncRNA downstream 643000 43914192 ~ 43914819 (+) False G37068
AMCG00019755 mRNA upstream 299445 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019753 mRNA upstream 521605 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019750 mRNA upstream 599451 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019751 mRNA upstream 634839 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019747 mRNA upstream 689864 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019762 mRNA downstream 27886 43299078 ~ 43302976 (+) True AMCG00019762
AMCG00019759 mRNA downstream 91809 43363001 ~ 43368277 (+) True AMCG00019759
AMCG00019764 mRNA downstream 256255 43527447 ~ 43552305 (+) True AMCG00019764
AMCG00019766 mRNA downstream 293894 43565086 ~ 43566039 (+) True AMCG00019766
AMCG00019767 mRNA downstream 431351 43702543 ~ 43705085 (+) True AMCG00019767
TU46131 other upstream 299286 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 703008 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 5745917 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6962397 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 7198099 36046490 ~ 36063845 (+) False AMCG00019662
TU46181 other downstream 59100 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 781882 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 2008263 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 3519835 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 5179436 48450628 ~ 48451167 (+) True G37779

Expression Profile