RNA id: AMCG00019763


Basic Information

Item Value
RNA id AMCG00019763
length 4693
RNA type mRNA
GC content 0.55
exon number 26
gene id AMCG00019763
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43369896 ~ 43399130 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGGGAAAATTGGAAGTACAGTACGGtactgtgtatgttttgtttagtttttggtGTAAACTTTCATTTTCAGCGTTTATGTATCAGACGAAATGAAAGTGTAGTGGTGTTATTATGGAAAATAACAGTTCTGCGTTTTAGTCATTCCTTAACGCTGgctgtttaatataaaaataagttacaAGTTTGGAAAATTTTGGGCTGAAGACACTACTTTGCATGTAGTTTTGCgagtttgttttcaaatcacatgggaaagaaataaataattaggaGAAGAAATTCACCTTGTTTTTCTCTGAAATCAGTGCATGACTTGTGGGTGTATGTGGGATGTAAATGGATGTGAAACTAGTATGGAAAAGACAACGGGAGACGTTTCCCCAAATATCTGCATAACGGAGTAGCATGCACCTGAAGGGGAGTGTGGATTAGCAGAGTGGGATGGGTACGGCGTCCTCCCTCGTCAGCCCCGGGGAGGTGATTGAAGACGCCTACGGGGGTGAGGGCGGGGAGGCCTGCGAGATTCCCGTGGAGGTGAAGCCCAAAGCCCGGCTCCTGCGCAGCTCCTTCCGCCGGGGCCCGCGGGTGATCGGGGCGAGCTTCAAATCCACTGCCTCCGTAGACCTGGAGTACGCCGCAGAGTACGAGAGGCTGAAGAAGGAGTACGAGATCTTCCGCGTCAGCAAGAACAACGAGATCACCTCCATgcagaagaaggaggcgaagcTGGACAAGGAGAACAAGCGTTTGCGGGCAGAATTGCAGGCGCTGCAGAAGACCTACCAGAAGATActgagggagaaggagagtgCCCTGGAGGCCAAATATCAGGCCATGGAGAGAGCGGCCACCTTTGAGCACGACAGAGACAAAGTCAAGCGCCAGTTTAAAATATTCCGGGAGACGAAGGAGAAGGAGATCCAGGACTTGCTGAGAGCCAAGCGCGACCTGGAGGCCAAGCTGCAGTGTCTGCAGGCTCAGGGGATCCAAGTGTACGACCCGGCCGACTCTGACTCGGATGACAACCACACAGACGCCAACGCCACAGGCCCTCAGTGTGAGTACTGGAGTGGGGGAGTGCTCGGGAGTGAGCCCTCTATGGGCAGTATGATGCAACTGCAGCAGACGTTCAGAGGCCCCGAATTTGCGCACAGCTTGATTGACATAGAGGGTCCTTTTGCCAATGTCAGCAGAGaTGATTGGGACGTGGCTGTGGCCAGTCTGCTGCAGGTCTCTCCGCACTTTTCCCAGTCTCTCCTCAGTTTCCCGGAGGAGAGCTCCAGCTGTTACACCGCTGAGCGGAGACAGGAAGTGGACAAAAgctccctgtgtgtgttgtttctcaAGTCCTCCGTCACCAGTTCCATGATGGAGGATGTTGAAGAGGCCTTCCTGAAGAATCCCGAGGCTCGCCCCTTTCTGGTTTACTGCCGCAGTGTGGGGGGGGAGCCTCCCTCGGGAGCAGCGGCAGACCTGATGGAAAAAATCACTGCAGCAGATAAGGCTGGCAAAGTGAAGGTTATAGATCACAGCGGGGACCCAGAGGATGGGGCCTGTAAAATATTTACCCAGCTGGAGAATCTCATCAAACAGGAGCTACTGGGTTGTGAGGGCCGGGAGGCTGGGACGGCGGAGGACCAGGAGCAGGAGGACTCAGGGGATGTCCTGTGGGACACGCAACACGAACAAGGGCAGGAAGACTCGGGGGACATCCTGTGGGACATGCACGACGAGCAGGAGCAAATCGAGGCTTTCCAGCAGGCCTCCGGCTCGGCCTGCCAGCTGGGATTTCAGAAGGGAGGACAGGAGCCGACGCCCTGTGGTTCTGACCCCGTGTTTTCTCCACAGTACATGGAGAGACTGAATGACATGGTGGCAGCACCCCCACCCATCCCACCGCTCCTGGTGTCAGGAGGACCTGGATCAGGCAAATCTCTCCTCTTATCCAAATGGCCCTTGTCTACCAGCTCGGAGCCTGTGCTGCTGATTAAACGGCTGACAGTGAAGCAAGTGGAAAGACACATGAAGTGGCTGATCGATCCATTGCCTGTCAACGTGAGGGTGATCGTGTCTGTCAACGTGGAGACCTGCCCACAGGCTTGGAGGCTGTGGCCCACACTCCACCTTGACCCTCTGTACCCCAGGGATGTGAAGGCTGTGATCGCCGCAGAGTGCCAGAGTGTCGGCATCAAACTTACCAAGGAGCAGGAAAAGAAGCTCGAAAGACACTGTCGCTCTGCCTCAACATGCAATGCCTTGTACGTCACTTTACTGGCCAAGATGATAGCCAAACTGCTGCACGACTCCCTAAGCACAGAGACCGACCAGCACATCCTGAGAGAGGTGGTGTGTCTGGTGTGTGTGAGCCACAATGGGGTGAGTGAGTCCGAGCTGCTGCAGCTCCTTCCTGGCCTGGACTGGCCGGTGCTGGCTGCTCTCCTGCACCGACTGCAGGACCTGTGTGCCGTGACCTTCGGTTGTGGGCTGGTCAAGTTTCGGCATCTCCAGGCCTGGGAGGCAGTGAGGCTTGAGTACATCGATGGTGAGCTTGGTTCATCTGTGCACCGAGAGAAACTCATCCACTACTTCAGCCAGCAGCTTAGTCAGGACAGAGTGACCTGGAGGGTGGCGGATGAGCTGCCGTGGCTGCTCGAGCAACAGGAAGAGAAGGCCAAGCTGCACAAGAGTCTGCTGAACCTCTTCGTCTCCCAGAATCTTTACAAAAGGGGACATTTCTCAGAGCTGCTGGCCTACTGGCAGTATGTGGGCAAGGACAAGAGCTCCATGGCGAGTGAGTACTTCGCCTCCCTGAAGGAGTACGGGAAGAGCTGCGAGAGCCAGGACAGCATGACCCGCCTGGCCAGCCTGTACGAGACGCTAGGGAGGTTCCTCAAGGACCTGGGCCTACTCAGCCAGAATGTCCAGCACATCCTTTCAGCTGCCCTGTTCCCTTACTCGGCTGTGGCTCCCCTGCAGCGATCCCTGGAGATCCGGGAGACGGCGCTGGATCCCGACCACCCCAGCGTGGCCCAGTCCCTGCACCAGCTGGCCGGTGTGTACGTGCAGTGGAAGAAGTTCGGCAATGCGGAGCAGCTGTACAAGCAGGCCCTGGAGATCAGCGAGAATGCCTACGGCCCCGAGCACCCCCGGGTGGCGCGGGAACTGGACTCCCTGGCCATGCTTTAccagaaacaaaataaAGCGGCCAAAGTGTTCCTCACACGCTCCCTGGAGATGAGGCAGCGCGTGCTGGGGCCCGAGCACCCCGACTGCGCCCAGTCCCTCAACAACCTGGCGGCCCTGCACTCCGAGCGCAGGGAGTACGAGCTGGCGGAGGAGCTGTACGAGAGTGCGCTGGACATCCGCAGGAGAGCGCTGTCGCCAGACCACCCGTCCCTGGCCTACACCGTCAAGCACCTGGCCATGCTGTACAAGAGGAGGGGAAGGCTGGAGAAGGCGGTGCCTCTGTATGAGCTGGCTGTGGAGATCAGGGAGAAGTCTTTCGGACCGAAACACCCCAGTGTGGCAACTGCTTTGGTCAACCTGGCTGTTTTATACTGCCAGCTGAAGCAGCACGGAAAAGCACTGCCCATGTATGAGCGGGCGCTGAAGGTCTACGAGGACAGTCTGGGCCGCTCTCACCCTCGGGTGGGGGAGACGCTGAAGAACCTGGCTGTGCTGAGcTACGAGGAGGGGGATTTTGAAAAGGCAGCGGAGCTGTACAAGAGAGCCATGGAGATCCGGGAGACAGAGCCCTCGCTGGTGTGTGGGAAGGCACCGTCCAGACATTCGTCTAGTGGGGACACCTTCAGCCTGAAGAACACGCTGCCCAGCCCTCACCTGGACCTGGGGCACAGGTGACCTCCACTGCCACACTGTGGTCAGGGTGGGTCTGTACGGCTCGGCTTCAAGTGCTAAAGCTCCCATGGCTGCCTTATTGGGAGCGCAGAAGTCTTCGCACTTCCTTGTTCGTCGATCGTAGCTTTTTGTGGAGGATCTTGCTCTGGTGCAAGGCTGAACAGCTGCGAATACGCCAAAGAGTCTGCCTGGAGCGGCCAGGCCAGGCCAGTCCCGGGCCAAATAAGACAGCCTGACTTTCTTAGTCTGCCAGGTAGAGTTataggttgttgtttttttgctttttaagatAGATGCATTGGCATATTTATCAATTCTGCCACCCCGGAACACATTttgccaaaactacactggccATAAAGCAAGCAGGCAGATTTTTTCAGTTGGATAGCCATACAATCTGCTGTAAGGAACTCGGGATTGTTGGGGGACTGGATTGAGGCCAGGGGCCGACTCTGAAAGGACATTTCAATATAGATCACAGCTTTTATGGCCCGCTTGTTGCATATCTGTTGTGTATGAAAAGAGTGCTGGGGGCACTTATCTAGACAAGGGTGAGAGTGGGTTGTGGTGTTTTTGGGAATTCATGCTCCGTGGTCCCAGTCTTTACAGTAACACTTTTCCCCATTTAAACAGACCTGCCCTCATAATTATACATCCGTTACATCCGGTGCACAAACAACGGTATTGCAAGTGGAAGATCAGTAATGGGAGAACAGTCGACTGCATTTATGTTAATAAGAGgatctgatttttttaattaatattatattcaaaCACTCCAGAAAAGTCGCACATTCTTTTATAGtcttttgttattaaaaatcgAA

Function

GO: NA

KEGG:

id description
K19360 NPHP3; nephrocystin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46213 lncRNA downstream 36583 43330289 ~ 43333313 (-) True AMCG00019761
TU46206 lncRNA downstream 66836 43266893 ~ 43303060 (-) True G36977
TU46126 lncRNA downstream 427397 42942242 ~ 42942499 (-) True G36907
TU46113 lncRNA downstream 521210 42848457 ~ 42848686 (-) True G36894
TU46063 lncRNA downstream 607162 42762531 ~ 42762734 (-) True G36882
TU46265 lncRNA upstream 127277 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA upstream 152178 43551308 ~ 43555509 (-) True G37022
TU46263 lncRNA upstream 156613 43555743 ~ 43556744 (-) True G37021
TU46277 lncRNA upstream 213234 43612364 ~ 43656444 (-) False AMCG00019768
TU46292 lncRNA upstream 423204 43822334 ~ 43822820 (-) True G37048
AMCG00019761 mRNA downstream 27190 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019760 mRNA downstream 87091 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 218238 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019756 mRNA downstream 393558 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019754 mRNA downstream 654286 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019765 mRNA upstream 157769 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019768 mRNA upstream 178378 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019769 mRNA upstream 405030 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 475795 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 483418 43882548 ~ 43929432 (-) True AMCG00019772
TU46211 other downstream 8990 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 713503 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 825372 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8314452 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8847626 34510733 ~ 34522270 (-) True AMCG00019645
TU46276 other upstream 178179 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 1497369 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2966208 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4493073 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 5123538 48522668 ~ 48523702 (-) True G37806

Expression Profile