RNA id: AMCG00019765


Basic Information

Item Value
RNA id AMCG00019765
length 2046
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00019765
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43556899 ~ 43563516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attatgatgatgatgatgatgttgatgatgatgatgttgtattatcattattattactcataTTAACTTGCATACTATCATTAACCTGTGCAGCTACTAACCTTCTCACTTTGACATTCTATTACTGATGTAGTATAATTTATGTTAGGAGTAGTATATGCTTCTGCTTCAAATACAACCCAGCACTGGTATTAACCTACTACTACACAATAATGAATATCCAGTAAAAGCCTATATCATGCAAACtgctgtcacatgcagacagtATCTTCAGCTCCTCTGCTGGGTAAGGCCTTGCTGTGCGCTGGCAGGCCGGCAGTCGTGCTGTGTGGGCTCTGCAGGTGACTGATCTCTGTGGAGTTTCCTTGGGCCGCAGCCGCAGCCGCAGCGAGGTTggtgttgcgcagatttccgcagctCTGCTTCTGCCAGGAATGTGACGTAGACGGCACAAATACGTAAGCAGCCAAGCCCCCAGACCGCCCGCCGCGAAAGGGAAGTGACGTAAAGCGCTAGTGATGACTGATACACGCTATTGGTTGCACCAGCCAATCCGGAAGAGCTGCTGAATTACCTGCTGTGAGGAACTCATGGGTTTTCAGAAAGCAGTTTTTACAGTTGATTTGAGACAGCAGCGCATAATTGCACATTTCTTTATCCCCACCTGCATTTAACGATGTTCGCCAACCTGGAGAAATGTCCGAGGCACTTAGTGGTGTGCGAGAAATCAAACTTCACGAATGACAAGTCCAGGCATGGGACCCACGTGGCCGGGCACTATTTTAACTACAAGGTGTCCATTTTGATACCTGAATGTGGGTCGTTGCCCTCAGCACTGCAGAGCATTGTAAATGGCTTCACAAAGTATTATCTGGTGAGGGATTTCCCAGTGTTTGAGATGCTGGAAGAGGAGTTTCTGGAGAGACATGTGAAAAAGGGGAGTCTGTATGCTCTGTCCTATCGGACCCGAATAGACCAGGACAACACCATTGCCCTTCTCCCAACAGGGACCCTCGTCTTGTCTGTAGATAAAGACACTTATGAAGCGCTTGGTCTGGAGGGGCAGAAGTCACAATATAACCACAAGATGAGATATGTGATCTGCATCGATCTCACCGATAAGTCTTTGGCTCCGGGTTCAAAGAAGTACAAGCGTGTGCTCTGGGCCCTGAAGGAGAAGGTCCAGCTCAGAAGTGACTTTCTGATGGCGAAGCATGACAACGCGGGTAAAGACTTGGGTCTCTCAGCTGGCTGTGTTTCCGGTCACTTCATGCGCTCATACCAGTGCAAGGAGTACGCGCCCACTGTCTCCACACGCAGGCTGACGGACACGCTCTGTCCTGTCATTAACTCCAGGCACCTGAGAGGGGAGGCGGAGGAGTCCTGCGATTCCCAGGAGTTCTTGGAGTGGTTGGGGGCTGTCACAGCTGGCGTCATTGACTGCAACAACAAAGCATCCAGTTTCCTATCCACTTACTGCTGCCCGGAGCCGAGAACCGCCCTGGGACAGGCCTGTCTGAGCAGCGTGACCGGCTTCCTGCTTCCAGAGGACATTCACAAGCTCCTGGCAGAGCTACGGTGCTACTTCGACGAACCCAAGTTTGCATCCTGGTCGTCCCTGACGGTGCACGGCTTTGCAGACAGCCCGGTGTCGTGGGGCACGGCGGAGCACGGCTTCCACAAGGGTGGGGAAAACCTCTACAGCTTTGTCATCTTCAAAAACCAGGACTACTGGCTTCACATGGTCGCCGGGGCTCATGACGGCTGCCCACCCTAGAGCAACACCTCCAGCCGGGGCTCTCACACTCTGCGGCGGAGGGGCACCCTTTCATCTGGCTGACTGCACTGCCAATATTAATCGTGAACAAAAGCCAGGGTTTGAAGGTCTCTCACAGTTGGCTGCTCAAAAGTGGGTTTGTATTCAAGGCACAACAACCCAGAGAATGATTGGAAGCCTCTTAAATGTGAAGTGGAATGAAGGGACTCTCAGCCCTGGAGGAAGAGGGAGCTGGGCTAGAACACTATTCAGCAGACAGTGGAGTGGGG

Function

GO: NA

KEGG:

id description
K14530 RPP40; ribonucleases P/MRP protein subunit RPP40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46263 lncRNA downstream 155 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 1390 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA downstream 1390 43551308 ~ 43555509 (-) True G37022
TU46213 lncRNA downstream 223586 43330289 ~ 43333313 (-) True AMCG00019761
TU46206 lncRNA downstream 253839 43266893 ~ 43303060 (-) True G36977
TU46277 lncRNA upstream 48848 43612364 ~ 43656444 (-) False AMCG00019768
TU46292 lncRNA upstream 258818 43822334 ~ 43822820 (-) True G37048
TU46452 lncRNA upstream 845701 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 873404 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 1160258 44723774 ~ 44735394 (-) True G37232
AMCG00019763 mRNA downstream 157769 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 214193 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019760 mRNA downstream 274094 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 405241 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019756 mRNA downstream 580561 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019768 mRNA upstream 13992 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019769 mRNA upstream 240644 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 311409 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 319032 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019774 mRNA upstream 483171 44046687 ~ 44056603 (-) True AMCG00019774
TU46211 other downstream 195993 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 900506 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1012375 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8501455 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 9034629 34510733 ~ 34522270 (-) True AMCG00019645
TU46276 other upstream 13793 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 1332983 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2801822 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4328687 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4959152 48522668 ~ 48523702 (-) True G37806

Expression Profile