RNA id: AMCG00019768


Basic Information

Item Value
RNA id AMCG00019768
length 1737
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00019768
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43577309 ~ 43713777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCACCTCTTGCACcacagcagcctctggcaattCTGCCGGGGCTTCGGAAAGCAACAGAAAGAAGCTGAAGCTGATAACAGTGGCTGTGCCGACACATTTAAGCCTGTCCGGCCCACACTGACCGGTCCCCGAGTATCAGAGATAGCAGCAGGACAGAGCTATAGTGTACCCACCTGTCCCAAACAGCTGAGTGATGAGTTTGCGGACAGTCTGTTTGAGGTTGAACTCCACCAGCTTGACGGCCTCGAGCGTGTGGGTCTCCTGCTTCTCCGGGGTGCGGGGGCCCCTCTCGAACAGACGCAGCTCCCCTCCGTTCACAACGCTGGCAAACAGCTGGCAACCAGACAAGAGCAGAGGCAAGGGGGTCCCAAAGCGCCCTGTGTACTGCTGGTAGAAGTGGGCTTTGATGCGCTCCTTGATGAGCCACAACGGGTGGTGCTGCCGATTGTGAAGGTCCTTGCCCACCTTGGACAGGATTTTGGGCGTCACGTTGGTGTAGTCATCCCGCTGGTGGATTGTCCCGAACAGCTCCGCGCATTCCTGGCCGCTGGAGCTGGGGGCAGGCCCCGACGTCACCCTTCTGTGGGCAGCCTGGGTGGGAGCTTCCCATCGGCCTCTGCGGAGCGCCGTGGCCTGAACCAGCCGGGCGATTGGCCCCACACCACCATACAGCCTCATAACCACACACCCATGCACCTAGAGAAGGAGAGCACAGAGAAAGGAGAACCGGACTGCAAGCGCGTCAGAGAAGGCTTCAGTGGCATGCGTGGGCCCGGGAGATCAGGTTCCCCAAACCAGGCAGACAGACCTCTGCTCTGTGACGGGCTGTGCTGCTCTGCAAACAAAGGAGCGGGCCATGTTGCCGCTGCAGTGACACCGCTGCAGCAAAACACCTGCAAGGTAACACACAGGGCATCAGGTGTCATTAGCCACAAGTCTGTCCACACAGGAGAAATGCCACTGATCTCGAGTGAGCTGGCTCGCTTCCGACTTTCGTCCAGGGACGGCGCGGCGCTGGAAGGAGTGAAAACCTTCCATTCATCAAAAAGCTACATCTCTGAGATACAGCCAGACATTTTATCTCCCAAAGGATACGATAAGATGCAGACCTCGCAGGTGATTTGCCCAGCTCTTGAGTCCTGTCAGGTTATTAAAGCATTTGACAGCCACACCATTCAGAAGAGGAggcagggggagagggaggcatGGGGgACTTACGCCCTCCGGAGAGTGAGAGACAGCTTCAAAGAaaacggagcaatggaagatcCCAAAGCCATTGAGGAGCTACTAAACAAAGGCAGGGAGAGTCTGGCAGTCATACGGAGGCAGATGTTGTCCCAGGTAGCTGAGATTCATGGGATACGAACGCAGTGCATTTGTGGCGCCAAGGtgccatcccccccccccacccgagACTCGCACCCCAGCCTatcacGTATTTGCTATGAGCAAAATTTTGAAAATCAGCTGAATTTCTGCAAAAAAGACGCAGAAACATTAGGTTCTCTTTGTGGAGTACTTGTGGAGCCCAACATCCAGTCCGCAAGGTTTTTCAGAGCACCTCCAACTCCATCTGGGGCTCCTGTACCATGTGATGCCTCAGTGAAGTTCCATGTGACTGATGTGAAACCTTTCAGGAAAGGGAACGGAGGCAAGGTGTCCATCGGCCACTTGTACTCGGCCCAGAAGATCGTGGTGGAGGATCGTGGGGGGCAGAAAGCCTTCTGA

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46263 lncRNA downstream 20764 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 21999 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA downstream 21999 43551308 ~ 43555509 (-) True G37022
TU46213 lncRNA downstream 244195 43330289 ~ 43333313 (-) True AMCG00019761
TU46206 lncRNA downstream 274448 43266893 ~ 43303060 (-) True G36977
TU46292 lncRNA upstream 108557 43822334 ~ 43822820 (-) True G37048
TU46452 lncRNA upstream 695440 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 723143 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 1009997 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 1182722 44896499 ~ 44898892 (-) True AMCG00019799
AMCG00019765 mRNA downstream 13992 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019763 mRNA downstream 178378 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 234802 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019760 mRNA downstream 294703 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 425850 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019769 mRNA upstream 90383 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 161148 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 168771 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019774 mRNA upstream 332910 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019776 mRNA upstream 356917 44070694 ~ 44102691 (-) True AMCG00019776
TU46211 other downstream 216602 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 921115 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1032984 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8522064 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 9055238 34510733 ~ 34522270 (-) True AMCG00019645
TU46596 other upstream 1182722 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2651561 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4178426 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4808891 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6996971 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile