RNA id: TU46276


Basic Information

Item Value
RNA id TU46276
length 497
RNA type TUCP
GC content 0.49
exon number 3
gene id AMCG00019768
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43577309 ~ 43713777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGAGCTTTATTTGCAAGATGGCTGCCTCCAGCAGATCTCAGGTGCTTTCACTTTATCGACTTTTGATTAAAGAGAGCAAGAAATTCCCCTCTTACAACTACAGgACTTACGCCCTCCGGAGAGTGAGAGACAGCTTCAAAGAaaacggagcaatggaagatcCCAAAGCCATTGAGGAGCTACTAAACAAAGGCAGGGAGAGTCTGGCAGTCATACGGAGGCAGGTGTCCATCGGCCACTTGTACTCGGCCCAGAAGATCGTGGTGGAGGATCGTGGGGGGCAGAAAGCCTTCTGAGGGGGAACGCTGGGTGGACAGGAGGAGCAGCATTGTTTCAATGAGACCTGGGAGGAACAGGTCCTTTTCCCTAGTCTGTCACAAAGCCAGCTGCATCTgacctgcagtgctgtgtgtagacCACAGGCCGCAgggcctttttttccccttttgttattattttgtgtgtgtgtgtatatatatatatgtgtgtgtatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46263 lncRNA downstream 20565 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 21800 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA downstream 21800 43551308 ~ 43555509 (-) True G37022
TU46213 lncRNA downstream 243996 43330289 ~ 43333313 (-) True AMCG00019761
TU46206 lncRNA downstream 274249 43266893 ~ 43303060 (-) True G36977
TU46292 lncRNA upstream 165890 43822334 ~ 43822820 (-) True G37048
TU46452 lncRNA upstream 752773 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 780476 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 1067330 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 1240055 44896499 ~ 44898892 (-) True AMCG00019799
AMCG00019765 mRNA downstream 13793 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019763 mRNA downstream 178179 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 234603 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019760 mRNA downstream 294504 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 425651 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019769 mRNA upstream 147716 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 218481 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 226104 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019774 mRNA upstream 390243 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019776 mRNA upstream 414250 44070694 ~ 44102691 (-) True AMCG00019776
TU46211 other downstream 216403 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 920916 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1032785 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8521865 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 9055039 34510733 ~ 34522270 (-) True AMCG00019645
TU46596 other upstream 1240055 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2708894 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4235759 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4866224 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 7054304 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile