RNA id: AMCG00019771


Basic Information

Item Value
RNA id AMCG00019771
length 387
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00019771
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43874925 ~ 43877635 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgttttgcaGCGTATGTGCTCCAGGCGGTGCGGGCTGCGGGGAAATGTGACACCGTGTTTAAAGGCTTCTCGGACTGCCTGCTCAGACTGGGCGAGAACATGGTGAACTACCCCCAGGAGCTGGACGACAAGGAAAACCTGCAGACCATCTGCTCGTACTGGGATGATTTCCATGCCTGCGCCACCACAGCCCTCGCAGATTGCCAAGAAGGAGCGACGGATCTGTGGGAGAAACTCAAGAAGGAATCCAGAAACCTGGAGTTCAGGGGTAGTTTATTTGAACTGTGTGGAGGGGGCAACGGGGCATCCAAACGCACCGGCCACTTTGGCTCCACCGTCTTTCTTATAGCACTTTGCGCTTTAGTGACATGGCTGGCTTTttag

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46292 lncRNA downstream 52105 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 218481 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 318181 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 319416 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA downstream 319416 43551308 ~ 43555509 (-) True G37022
TU46452 lncRNA upstream 531582 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 559285 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 846139 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 1018864 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 1057888 44935523 ~ 44936756 (-) True G37290
AMCG00019769 mRNA downstream 65220 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019768 mRNA downstream 161148 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019765 mRNA downstream 311409 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019763 mRNA downstream 475795 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 532219 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019772 mRNA upstream 4913 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019774 mRNA upstream 169052 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019776 mRNA upstream 193059 44070694 ~ 44102691 (-) True AMCG00019776
AMCG00019777 mRNA upstream 226861 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019778 mRNA upstream 307897 44185532 ~ 44189156 (-) True AMCG00019778
TU46276 other downstream 218481 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 514019 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1218532 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1330401 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8819481 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 1018864 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2487703 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4014568 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4645033 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6833113 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile