RNA id: AMCG00019772


Basic Information

Item Value
RNA id AMCG00019772
length 2373
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00019772
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43882548 ~ 43929432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTATGGCACACAATGGGGAAAAGGTGCAGTTTTACAAGCCAGCAAGAGCCATGTCAAGCACAGGGAGCCGGCCCGCTAACCCTTCTCATGTGGGGCGCAGCAACATCCCACCCATCATCTCCAATGCGGAGGGCGAAGAAGTCCCAGAGTTTGAAGCGTTTGGGCTTGCGGTACGAGGACATAAGCCTAACCTAAGCAGCTTCCTGGATGTGTGGGATGTGAACATGCTCTGTGAGACGCGGGAAATCAACAAGAAGGAACACCGAACAGATATGTTCGTGAATGAGAACCTGATTGTGCGTCGGGGACAACCCTTCCAAATCAAGATCACCTTCGATCGAGAGTACGTGGCTGAGAAGGACCAGTTCTGGGTGGAGTTCCTCATTGGTGCCTACCCACAGGTAAACAAAGGTACTTATATCCCTGTCTTGCCAAACCAAGACCAGGAGGGGATGAAATGGGGTGGGAGGGTGCTGGAGAGTGAGAACAATGTCATCACTATGGCCATCACCCCGGAACCAGATTGCATCGTGGGGAAGTTCCGCATGTACATTGCAGTCATGACCCCTTACGGCATCCGCAGAACAAGGAGGGACCCCAAGAAAGATCTCTACATCTTATTCAACCCTTGGGCTCCAGATGAATCTGTTGTTAAGCATGTGTTTGAGTATGGAGTTCTGGATGCCTGCCTCAATGTAATGGACAGAGCACAGATGCCTCTTTCTGGGAGGGCAAACCCAATCAAAGTGAGCCGTGTCGCTTCTGCAATGATCAATTCCAGGGATGACAATGGGATACTTGAGGGCAACTGGAGTGGGGACTACACCTATGGCGTTTCACCTACGGCCTGGACGGGGAGTGTGGAAATCCTGCTAAACTATTCATCCGCTGGTGTGCCGGTGTGCTATGGCCAGTGCTGGGTCTTTGCTGCGGTGTTCAATACCTTTCTGCGCTGTCTGGGGATACCGGCTAGGGTTGTAACCAACTACTTCTCAGCTCACGACAATGACCGCAACTTGAAAACTGACGTCATATTGGATGAGGATGGGAAAGTGGATGTGAAATTAACCAAGGATTCCATCTGGAACTACCACTGCTGGAATGAGTGTTGGATGGCAAGACCTGACCTACCACCGGGATTTGGCGGCTGGCAGGTTGTGGATGCAACTCCCCAGGAAACTAGTGATGGGATGTACAGATGTGGCCCTGCTTCAGTCCAAGCTATCAAGCATGGGAATATCTGCTATCCTTTTGACACTCCCTTCATTTTCGCTGAGGCATgttctactgcactgtactgtctGTATAATCATGTTAATAGTGACATTGTTTATTGGAAAAGGAATAAAGATGGGACTCAAGAAGCCATTAAAGTTAACACACACCATGTGGGAAAAATGGTATTGACTAAAGAAGTTGGCCGAGATGGAAGCAAAGACATTACTGAAAGCTACAAATTCCCCGAAGGAAGTGAGGAGGAGCGTCTGGCCATGGAGGCCGCTGTGAAGTACGGGATGTCGCCATTGTCTGTCTTGCTCCCAGAGGCGGATGTGGAAATGGATGTGCATGTGGAGGACGTGGCAATTGGCAGTGACTTCAAACTGACCTTGCAGTTCAAGAATAAAAAGGCGAAGCCACGCTCCTTGAACATCTACGTTAgtggcaacattgtgttttaCACGGGTGTCACCAGATCCCAGTTCAAGTCTAAGACAATTGAGGTGAAAGTGGGACCTTTGCAAACTCAGACCGTGGAGGTGGAGGTCCAGGCCCGGGAGTACATGAACAAGCTGGTGGAGCAGGCCATGCTGCACTTCATCATCACGGGCCGCATCAACGAGACCTCGCAGATCGTCACCTCCCGCAGTCTCGTCACGCTGAAAGTGCCCAAGCTGACCGTCAAGACGGCTGGTTCACCTAGAGTGATGGAAGAAATGCTGGTCACGGTGGAATTCACCAACCCCCTGAAACAAAAGCTGGAGAACGTGTATATGCGCATAGAGGGGCCGGGCCTAATGGGAGCcaaagtgaaaatgtacagGGCGTCCTCTGCCCGGGATCTGCCCCTGCCACTGAACCTGTTCCTGCCCGGGTCCTGCCCCTGCCACTTACTTTGTTCCTGCCGGGGACCTGCCCTTGCCACTGTTCCTGCCCAGCACTTGCCCCTGGCACTGAGTCTGTTCCTGGCACTGGATTCTCCCAGAGCCGGAGTAAACCTCTTTAGTATTCTGGGTGTCAGTCTGGCGCAAAAAGACACCGGCTTTCTCCAAATCCGATTGACGTCAGAGCAAGAAATTCCTCCTGTCAGACACCCACACAGCGTCACTGCACTGTCCGTGCGCCGGGTCCCTGGAGGCGCCTCCATCTAG

Function

GO: NA

KEGG:

id description
K03917 F13A1; coagulation factor XIII A1 polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46292 lncRNA downstream 59728 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 226104 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 325804 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 327039 43526407 ~ 43555509 (-) False G37022
TU46452 lncRNA upstream 479785 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 507488 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 794342 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 967067 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 1006091 44935523 ~ 44936756 (-) True G37290
AMCG00019771 mRNA downstream 4913 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019769 mRNA downstream 72843 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019768 mRNA downstream 168771 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019765 mRNA downstream 319032 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019763 mRNA downstream 483418 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019774 mRNA upstream 117255 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019776 mRNA upstream 141262 44070694 ~ 44102691 (-) True AMCG00019776
AMCG00019777 mRNA upstream 175064 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019778 mRNA upstream 256100 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019779 mRNA upstream 310058 44239490 ~ 44241946 (-) True AMCG00019779
TU46276 other downstream 226104 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 521642 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1226155 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1338024 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8827104 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 967067 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2435906 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3962771 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4593236 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6781316 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile