RNA id: AMCG00019774


Basic Information

Item Value
RNA id AMCG00019774
length 4043
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00019774
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44046687 ~ 44056603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAAAAGGGCTGCACAATACCCGGATGAGCAGCATACGCCATTATTACCAAGCTGAAGAAACGCGGGGTCAGGGAGACGAAGAGAGTGAGATCTGATCGGGAACCGTGTATTAAGTCTTGGGGGAAAATGATGAATTTTCTGCCGAAATTACTCCTGATCGCCTTGTTGGCGTTTCCCGCGACGATCCTCCTCAATGGCAGAGGCCCTCTCGTGGCAGCGCAAGATGCAACAGAGGATGAAGAGGCAGCGGATGATGTGATCGCAGAGGATGAAGATGACGAAGCTGAAGTGGAAGACGATGAAACGACAGAGTTGACGGAAGaaaaagatgaagaagaagaggatGTAACCTCAGGGGAAGCAAAAGCCTCCCCCAACGCTGATACCACCATCCTCTTTGTGAAAGGAGAGGGTAAGTCCAGAACAACGATGCCCAGCCCTGGGGACCTTGCTGCCAAAGGTACTTTCACCAAATATTTGAGttgaggggtctgaatacttctgctgttaacatttcattttttgtctttagtttttgctgacatTGACTTATCTTACCCTCTTTTAgcaaaactgcattttgtaaCTGGGGAAACCATTCAATgtgtctgaatacttttgcaagtgtgtgtgtgtaatgtgtatgcatatgtgAAGCATAAGCTATTGTAGTTTGAGCAGGAGCAGCTTGTGTGTTGAATATTTTGAGCACTGGAAAAAGGCTAAACTTCACAATGCTGATTAGTCTCCAGCCTTCCCTGTCTTAATGCTCATGAATTTATAAATCCTGTATGCCTGCTTCCTGTCCCTGTAGTGGTGTTTAATGTCTTCAATGTTGCAAGCTTTTGAACTCTTGAGTTCATCTGCAAAGACTTTCACCACGGAGACTAATcgggatttgtttttgtatgcgTCTCTCCACCCCtcattgtttttcaatacatCGCTGCTTTTCAACAGATTTCCCCGCCAACAACATTGTGAAGTTCCTGGTTGGTTTCACCAACAAGGGCAGCGAGGAATTTGTGGTGGAATCCTTGGATGCCTCATTCCGCTATCCCCAGGACTATCAGTTTTACATCCAGAACTTCACGGCCCTGCAGCTGAACACGGTGGTCCCGCCCCTGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCCGCTGAGCCAATGGGCGGCCGGCCCTTCGGTCTTGTGATCAACCTCAACTACAAGGACAACAATGGCAATTCGTTCCAAGATGCTGTGTTCAACCAGACCGTGACCATAACCGAGAGGGAGGACGGCCTGGATGGTGAAACGATCTTCATGTACGTCTTTCTGTCTGGTCTGGGACTGCTGGTGGCTGTTGGTCTGCACCAGCTCCTCGAGTCTAGAAAGAGACGGAGGCCAGCGCCCAAGGTGGAGATGGGTACCTCCAGCCACAATGATGTGGACATGAGCTGGATCCCTCAAGAGACTCTCAACCAGATCATGCAAAGCAGAAGAGGAAGAGGACAAGGCCTCCCCGAGAAGATCGCCCCGCAAGAGAGCACAGAAGCGGTCGGCCGGGTCGGACGAGTAGTGGCAGGCGTGGCGACGAATGCAGCTCATCCGTCATCAGTCCTGTCCATCGCGTGTGACACCGCCAGTAGGGCGACCGAGCCACACCAGCACGTCCATGGGAAAAACGGGGAAaaacggggggaaaaaaaaacatagcagAGCTGGCTTATtctagtaataaatacaaaaataattgtggCTAGCCTGCAGCAAACTTGGAGGAAAGTAATAACCTCCAACTTATTTTACTCTTCAATTCAATCCCTTTTGATTTTTAAACCTAGCTTTAACTCTAGTCTTAATCCAGAGAGCTCTTTGTGGCCGGTCTTCACAAGTGGCAGATGGAGCACTGTCCATgatgggaggagggagagaggtggaaacctttttttttttttttttttttttttttcccctcttttcaAATCTGAagttgccttttttgtttttgttctttttccttttaaagggTCCTTGAGAATCATGATTGTAGTGCATCTGGAAGAGCCCTGTACTTGTGCTTATGGTGTCTTGCACTGCTGTCTGTTAAACTGAGTTACTCCCAGCTGTAACTGGGGGGGTATGTCTGTTTACTGCATATAGTTTTCATTGAGGCAGTGTTGGCAGCAGACTGGTACAATTGTCCCCTCCCCCGCCACACTGCCAAAACTGCTCTTAAGTGCACTGAAATAAAGCAGCGGAGATGCTGTTTTTCAGACTTTGACATATAGGCCAACGTCgaaagatttttaaattaatctggattttgtttttcttctctttaaaatgtgccagttttttgtttttgttttggtctgtcttctgtcttcagttttgtatatttgtggTGCTGCTTTATATGGTTTACTAGAATTTTGACACTCGTCATTTTTCTTGAATTTTTAAGAAGCACTGACTTGGATAAGTACTACAGACTTACAACCACAACACAGACTTAAATGATTGGCCCTCTTTGAGCTTCTTAGCATCTACTGTGACCTGCTGCCAGAAGCAATGTTTTTGATACTATAAATCACTATAATTTGTCATTGCAGAAATGGAGAGCTTCAAAtgccatttcaaatatatatacatttgctaAGGTAGATGTCTTTTTCATCAAGGGGTCTTTTATGTAAAAACCTAAAGTGCATGCTCAGTCAGTAGCTACACTAATGTTCCTTGTGTTTACATGTGGTTTAATAAGGCATGACGAGAGATCCTGTCCTGGTTTATTTAAGGTGGTTTggttacagtttaaaatatttttcggTTATGTTTCAATAAAAATTTTAACCAAAATCAAAAATTCCAAAGCGGGAATTGTTTGATCGAAACACTGTAGCATTGCAATGCAATCCCGCCTTAAGTCACAGCACGTCTACTGTCATGATATTTTTATCCTGCATCTAAACGCCGCCACTGTGATCCAAGAATCGCATCCATCTACCATCTGACATTTCAGGCCACAAGGCAGCAAGTTTGAGCCAGCGTAATGACAACCACAAAAACCATTGCAAGTTAACGAATCCTTTAACGGTGCTAGAAAGAAGAGTTTAGTAAACTCTGCACCGGATGCAGTGCGTGTTTCAAAATGTCTTCACGGGAGTTACAAAGTGATGACTGCAATATCTCAGTCGAGGGAGAAGCTCTACAGCAACTATTTTTAACTTGTTAACATATCAGCTTTTTTATAGATTGCAACAAAGAGGAAATCGGTGCTTGCTGGTGAGTGCACTGGTACAAAAGCAATGCTGATTTGTGGGAGTCATTATATGGTCTCATCCGCAATGGATAACTTGTCTGCTTACAAAGGTCTAACAGGTGGCATCTGAAGTTACCGTCTGAGTACTTGCTCTTTTTCCTCATGGTTTTTAACCACTGAACACATTTTACTGGCTTTgcaaaaaacagttttgttcCCCAGCCTCAAATAACTGCAACAAAGTGAAtccctgtcttgcaggaaaagGAAAACTGGACTTTTTTTGCCCTGAATATTGTACAGTCTGATTTTTGaaattttgtacttttgtttttgtttggtttaggtGGTTTGATTTTGAATGGGAAAAGTAAAGattaaatttaacttttttttttctcccacttCTTCTTgtggtttcttttctttgagtaaaaaggtttttaaaatttcaaataaaatgaactgcTTATCCAGCTTTATAAGCCGCATCAAGGCATTGACTTGAATTGAATTTTTCCAAATTGAgtctttggatttgtttttgggAGTTAGAAGGACTGCCTTTTATACTCTGAGTCCCTTGTATTTGTTGGAGAGATGTAAACTGTTTCAGTTCTGCACTCATGTATGCTTTTCAGTATAGTGTCTGGCTGTGTTTCTTTCAGGAAAagcaataatgaaaaaaatagaaactaggggggtgggggtataAGAACCTTATTATGCAGTCTTGGTTAAAtgacttaatttaaattttctGCTACAtgtatcaaatgaaaaaaatgcaaa

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46292 lncRNA downstream 223867 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 390243 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 489943 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 491178 43526407 ~ 43555509 (-) False G37022
TU46452 lncRNA upstream 352614 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 380317 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 667171 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 839896 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 878920 44935523 ~ 44936756 (-) True G37290
AMCG00019772 mRNA downstream 117255 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019771 mRNA downstream 169052 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019769 mRNA downstream 236982 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019768 mRNA downstream 332910 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019765 mRNA downstream 483171 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019776 mRNA upstream 14091 44070694 ~ 44102691 (-) True AMCG00019776
AMCG00019777 mRNA upstream 47893 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019778 mRNA upstream 128929 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019779 mRNA upstream 182887 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019783 mRNA upstream 281909 44338512 ~ 44340800 (-) True AMCG00019783
TU46276 other downstream 390243 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 685781 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1390294 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1502163 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8991243 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 839896 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2308735 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3835600 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4466065 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6654145 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046774 True 885 mRNA 0.55 7 NC_007135.7 42081728 ~ 42090635 (-)