RNA id: AMCG00019776


Basic Information

Item Value
RNA id AMCG00019776
length 7809
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00019776
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44070694 ~ 44102691 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCATGCTGCAGCCTCACTTCCCTGTGTATCCTGATGCACTGCTTGGCTTTGTCTGTAACATCGATTTCTCCTGGCAACAGGTGAGATACAAAGAGAAGTTTGAGAGGGACCTGAAGGAGAAGAGACACCAGTATAACCCTGGGGATAGCGCCACCTTCCAGCAGGCACAAGTAGCTTCGATCTTGGCCAGTCAGgTGAAATATAAAAGCGATCTGCAGCAGATGCATGAGCCCTCCTCAGACTTGCCAAATCTTCTTCATCTGGAGCACACGCTGCATGCCAGCAAGCTGCAGAGCACGATCGAATACAAGAAGTTGTATGAGAAATCCAAGGGTCATTACCATATGGCTCTGGATACAGCCGAGCAGATCCATCACCGAGAGAGCGCCGTGCTGCAGAGCCAGGTCAAATACAAAGAAGACTATGAGAAATCGAAAGGGAAATCGCTGCTGGAGTTCTTGGACACCCAGACTTATCAAGTTTCAAAGGACGCACAAAGAAATCAGAGTGAGAAAGCATACAGGAAGGAGTATGATGACACTATGAAAGGCAGGGCTGCCGTAGATCTGGATCTGGCCCCAGCGTTTCTGCACGCGCAACACGCCAGCAGCCTGCTGAGCCAGGATGATAGCTTTGGCTGCGTGGCTTTAGCAAGGAGAACTGACGGGGCAATGCTTGTGTTCCAGAAAGCGTACAGGAAGGACCTGGAGACGGAGATAAAAGGAAAAGGCATGGAAGTCAGCACAGAGCTTCCTGACATCCAGAGAGCCAAGAGAGCCTCACAGATGGCCAGTCAGaaggAATACAGGAAGGATCTGGAGACTGAAATCAAAGGCAAAGGAATGGACCTGAGTACCGAGGTCCTGGAGATGCAGAGAGCGAAGAGAGCGTCTGAGATCAGCAGCCAGGCATCCTATAAGCAAGAGCTAGGGGAGAACACATACGGCACAGTGACGGACACCCCGGAGATGCTGCATGCTGCATACGTGAAGGATATGTACAGCCAGaaaaaatataaagacgAGGCGGAGAGACTGAAAGGCACCTATGCCACGGTTGCAGATACTCCTGAAATGCAAAGAGTGAAGACCAGCCAGAAGAACGTGAGCTCGTTGCAGTACACTTCGGACTCGAAATTACTCCGTGGCACGGTGTCCTCAGTGGCAGAAACGCCAGAAATTCTCCTCGCCAAGGAAAACACTAGAAGGATCAGCAATGTGTTCTACAAGGATGGAGTAGGTTCTGGGACGGCGGTGAAGGACACGCCGGAGATGGAAAGAGTGCGCCGAAACCAGCAGAACGTCAGCATGGTGAGTGACGGGGACCTCTGTGTGTCTCTTAGGAGGACGCGTCCAGTCGGGACAAGACTGGTCATTTATTTCCTAGGCTTTATTTCACATCTCTCGTCTGTCCTGCTTGGGCATGGTGTGTTTGTATCGGCACACACAGCGAGCAGCTTCACCCGCTGCATTGGCCACGCAACGGCCATCCCAGACCCTCCGGAGCTGAAGCGTGTCAAAGACAACCAGAAGATCCTCAGTAACGTGAACTATAAAGAGCAAGTGGGCAAGGCGACAGCTGTGGGAATGACTCCGGAGATGGAGAGAGCCAGGAGGAACCAGGATAATATCAGCCTGGCAAGTTTCCACCCCACTGATGGAGTGAAGTACCACAGCGACCTGCGGGAGATGAGGGGGAAGGCGTGTGCTGCGTTTGACACGCCAGAGCTGAGGCGTGTCAAAAAGACCCAGAGCGACGTGTCTATGGCCAAGTACCATGAGGACTTTGACAAGACAAGAGGCCGAGGTTTCACCCCCGGGATGGACGACCCACACATGGACAGACTGCGCAGGAACCACCAGGTGGCCAGCGAAATGGCTTACAAAGGTGTGCACCCACACGTGGTAGAGATGGACAGAAGACCAGGCATCATTGTGGAGAAAGCAAACTGCGTTAGTAGTTCAAGGTCTCAGTCTGTAAGCACAGTGGGCGACACCAGGTCTGAGGTGTCGGATAAGCTCCCGAATCTCTCCTGCTACAGCTCCAGCTCGGCCAGGACCTCCGTGGACAGAGCCCCAGTGCTGCCAGGAGCCTACCACCCCGGCGGGCACCCCCAGGGCTACGGATACATGCACCAGACCAGCATGTCCTCCATGAAGTCTGTGCAGTCCCCCCCACACTCTGCCAGCATGCAGAGAGCATACAGAGCCATCTATGACTACGCTGCCCAGGACCATGATGAGGTGTCCTTCAGAGACGGCGACGTCATCATTAACGTGCAGCCCATCGACGAGGGCTGGATGTACGGCACTGTGCAGAGGACTGGTAAATCCGGGATGCTTCCGGCCAACTACATTGAGACGTTCAACTAAAGGTGTAGAGATCATACTGtgctttgcctttttttttttttttttttttaactagacGACATTGCTAACATTTTAAGAGGCAGGATGAGTGTAAAGGATATTATGACTACTCAGTACTATACTGTATAAACTTTCTGTTCCCTGTCATCTCTTAACGCACTGCTTCATTTTACATCTCATTACGGGACGCAAAGGGTTTTGTAAACTCACCAAATGAACTGAAGTGGGTTTGAGTCGCAGCACAATTGGTTCAGATTAATTCTGCTTTCGTTGGTCTTTAACTTGTAACAGTATGGGGGAGGTAGATCTCAGTCTGCAGGAGCTGCACCGCTGCTGCAGGTTGCCACACAATGTGAAGACGGCTAGATGAACTGAAGCACTGGGCCTGTCGGTCATTGACAACCCAGAGCACATCGTATATTAGGGtctgaaaaaataagtacaaaaaCAGACATCTGCAAAATTacctaataataacaactaccCTTCTGGCTGTCCAAAGCTTGGATGCtcaaactttttaaaaacactctGGAAAATTCCTCAGTGCTATTGTCAGTGTCCTGCCCAGTCAATGCCCACATCTGAGAGATTGCCACTCCCAGTTCCCAGATGGGTAATTCCAATTTTATGTAAGTAAAGTAATGCCCGAGGGAGGATTGCGTGGCTCTGTGTTAATTGTCATCATGCCACAGTGTCAAATTAGAGCAAGCATTGAATAGTCCAGACAACAGCATCCTCCTTTAAAGCAGTGATCATGGAAGACTTTTCTGAATTtctgcatgtatttgttttaattacacattaagtCTAATAAAGGAATGCAACCTGATATTGATAGTGAAGAGAAGCTCTTAATTTCCCCATTTCCAACACCAGATTGGCTTTGTTAATGTCCTGTCTGTAGTGAAGCCGTGGGAATGCGTCTCCCCACTGCAGTGAGGACCATCAGAGTCGACGCCCTGTCCCGGCAGCAGCTCTTTCACTCTGTGGGCTTTGACTTAGCACAATCTGGTATTTGCACCTCTTGGCTCATGTGGTGTGTGATGTGATGTGTCGGAGGTCATTGATTTAAAATTTAGGAAAACAATTATTGTAGATAAGTTTCAGTTCGAATATATTTGTCAGGTCGGAACCAGAAGACCAGGGGTTCCTGTGGTCATGTACCAGGTTTTACGGCCCTTTGCAGCCTGTGGCCCTGAGCAGCTCTCGTGGGCCCCTCGGGGCTCTTTCGTGTGAGATGTTAACTGACTCGGTGCACTTCAGCGGCAGCCCCCAGCTTCAAGCAGTTCGGTAATCAAAGCCGTTATGGAGAAGAACATCTTGTAACGTACTTGCAGGAAGGAAGTGACACGCCGTGTGTTCCGGTGGTGCCACACAAGAGTCCCCTGTGGTATGGAAACACAGAGGCTTCTGCTCAGTTCTCTGTGGTCACTGGCAGGCCCACGGTTAGCTAACCTCTACATAGCACTCTGGGCTGTGActactgtaagtcaccctgggtaagagTATCAgctatattaataaattaattacttaataattaattaaaaacatgacctGGTACCCTGTAATGATATGCTGATTGATAACACCCCAAGGTTTCATTAATCAAACGGCGCGTTTAAGACTAGTTATTGTGTTACAATGTGTCAGTCATATAATCACCACCAGTGTGACGTAGACGACTTCACCGTTTACAAAACTTTTGTGTCTTTgactgttttcttttacatgtaGTCAAAACTGATATAATAAGTCTGCTGTTCATGTTTTTAGAACATAACCACTGGTaatcatttgtttaaataatgaaattaaataaaaaagacttgATTGTTTGtcaatatttgattttttttgttgttattaattgCAGTGTGACAcgtggagaaaataaacagctttGCCAACCCGGGCTTGTATTTGTTCAGATACATAttcttattttactgtaaaaaaaattaaatgtatttttttgtcaatgGAATACATTCGCTGTTCAGCTTTCAAATGCAAACCAATtccattaatttccttttcttttcttccatctTGCACACGTGTGTTCAGAAGTGAAAGATGCTGTAGCTGCATTACATAGCTTGCCCTCCGTGTAGACCGAGGGTTCCTGCTGCAGTTGTAAGCTCAGCAAGAGACTGAAGCACAGCCATTTGTGAGGCAAGCGCAGAGCCGGCTGCACTGTTGAGAGTTGCTACTTGAAGGAGCCCAATGCTTCCATTAATTCTAAATCAAtggaatattaatttaaatgtctaaaATGAGGTGATAAATTGAATCTGAAGAACTGGAAAGTAACGCAGTGGCCCTCAAGTCATCATACTCTGCCATCACTTGCTATTATGcagatttaatgtatttattttggggggggggggagtgaggTTGCATGTGTAATCACAGAAGATAAAAGTCATTAGAGAGGTGTGAGGTATTGAGggagcaacaaaacaaaaatgtaaagtggTGCTAGAGAGCATACAGACACATACGTTCTcactcacccccccccctcactgtTCACACCATCACAGCAGAGATAGAGTTAAGAAATGGCACTGAATTAATCCTCAGGAATATCCCCCCCCAAGTCCTGAAGACACTCTCCAAACAGCATAACcaggagagaagagaaaagcaCAGGATACTTCAGGGCCTGatgttcctttttaaaataaacgcTCAGAGAATGTAACTATTTTTATACGGAAGATTCTGAATGACTGTTTTGTTGTGAATGACGTCAGCCATTGAAACGTGAATATGAAGAAATGGCATTTTATTGCCATACAAGAAATTGTGTTTCGTCTCGTGAGATCCTGTTGATTGCTTTTTCTGCCCATAATCAGAGAAGATTATGCACCTCCCCAGCCTGGTACACCGTGTATAGCATTCACACAGGTGCCAAATCTggctttgtttgtctgtttccaTCAATTTAACACAAGACTGACAGTATTTCGCAGTCCTGATGTGATCTGAGTTGGGGGCAAAAAATATAAACGCTCGCCAATAAAAGACAAACCTTACATGACCAGGATTACCAGAGAATTAAACCAGCACTGTACTTGTGTAGGCACAGAAATCCAGCTGCCATTCAGCCATGAGGGGGAAAAATGGCAACATTTAAAGAGACAAACTCCTTGTCTGATGTGGAGTTCAGTACTGAAACACAGGAAGAGGAGGACCTTGGTTAAAGGCCATGTTTGGATGTGTCCTGATACTGTCAGTGCACACTAAGGCAATGCACTTCAAGCCATTTTCCACAACCCCAGATTTTGCTCGCCTTGATTCAATAGGTGTGGAGCTTCTTTAAACATCTCCAAGACTGCTACTCCCCACTTAACTTATTTGGTGTGTTGTGCATATGTGCAGTGAGTTGGGGTTGACACGGTTCAGTCCGTACCAGTCCCAGTGTAGCATTGTGTAGCAGAAGAGCGAACGACCTGGGTGTGAAGCTCTGGCCTACATTCAGTTACATTTTGCAGTGAACATCCATTTTATTCTGCAGTTCTATGCGCGTTTCCAGTTGTTCTCGGACAGCGCAGAATGTGTCACCGAGTTTCACTAGTTCCTTCTTCCCGCATCAGGCCACACATGTGGCTCAGGCTGCATTTTGACTCCATGTTTCTCAGACTTAACATAGTGCTTGCCTTCTCTGTGTGAGTCTGTACAGTCAGCTCTTAGACACTGTGCTTTTCCTGTGGCAATTAATTCAGACTCAGTTGTATTGCAGTGTTTACATATTCCTTCAATTTCTAGTTGGTGATGAATAGCACTGTGGAACAACAtcaatacaatgtgtgtgtgcgtgtgtgtttaaCAACACAATTTACAATGGTCTGGTAGCCGTGTTTAATCTGCAACAGTAGGAACTGGTGACCTGGTTGTTAAAACCATATTCTTCTTCGTTATGTGTGCAGCATATGCTTCAGTCTGGTTTCTCTTCTTCCCTGTTGCCTCTGGTACACAGCTGTGCCTGACAAGCAGGCCGCCTGTGTCTTGACATCATGGTTATACTGCATGCTGCCCATACACAATGTATCCTTTCCATTTTTGACTCTTGGATTAGTTCTGTTAAATAAAAGACTATCCACTGTGTGTACACTTCTGCGTTTGTCATTTCTCCATCTGAGCTCTTGTGAGCATTGCATTGTTAAAGACTGTTAACgttctttaaatacaaatactgtgtgtaatatattttaaaacgtGTGTCAGAATAAACAATCTTGTCTTGTTTAGTAGACTGTACAGACCAGTGTGTCAGTTTTCTGTATTCTCCAAGGAAGTAAGTGCAATGGATTACAAAGTagttatttgtaaaatacacagGCTTATAACtttagagaataaaataatttggagtTTATTGGCTTGacaaataagttattttaaatcctgttcATAAGTTTATTGCATATAATAAGCAATAATATAACTTTATATTCTGAATgaggcataaaaaaaaaactgatttcttTGAAACTGTTTGGCATCTGGCTTCATTCACTGAATTGCTCCATAATTCATGAAGGAAATTAGGCAGAAAATTTGAATTATTACTTATCATttctaaaatctgaaaccttgTTGtgcaaacacattaaattaattaaacttgtgACCCCCTTCCGCTCCTCAGATCCGGAAAACTAATTGAGGCAGAGAAGACTGTGACCGTTCCCTCTCCCAGCGCCATTAGTGTGTTTGGGGCTCATCAGCGTAATTAAGTTGACATGCCTAAACGGCTGACATGCCTATGAAGTCCTGTGTTGTAGGTTTTCTTTCACCTGAACAGGATGTTAATTTGAAACTACCGTGCCCGGTTAGATTTTGcatgaaatgaacacaaatgtttgttttaaacacaaaatccaTGGGCTAATtgcaattaataataactaGTATGCAGTCATGTGCTATCTCGAGGTCATGCGCAGCTGCCTGCTCAATCGCAATGAGAAAACATGCGGCTGACCCCTGCTCAGGAATAAACACAGTTTTgacctgtattttgtttatgtttcaaGCTAATACTGGTATATATAGGTCAAGATGAATCCATAGTTATATAATTTGCCTGTGTAACAGCATGCTAAAATACTCCATGTCAGGGCAAACTgatgaaactgaaaactgataaaattataatttaataccACCTCAAGGATTTCTTTTAGAAATATTATGTGATTTTCTTCAAATAAGTGGGTTGTTCTAGAAACTTCTATAGGCATATTTcatgattacattaatttactGTGTTTACATTGAACAGTGACATTTGTTGGAGCATAAGTAACGTTAAAAAGTgatcgttttatttttttaataacccacaataattttgaatgattttttcCTCTCAAAATGGCATATGTAGTATTTTGTATGTAAGCTCTCCaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46292 lncRNA downstream 247874 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 414250 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 513950 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 515185 43526407 ~ 43555509 (-) False G37022
TU46452 lncRNA upstream 306526 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 334229 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 621083 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 793808 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 832832 44935523 ~ 44936756 (-) True G37290
AMCG00019774 mRNA downstream 14091 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019772 mRNA downstream 141262 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019771 mRNA downstream 193059 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019769 mRNA downstream 260989 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019768 mRNA downstream 356917 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019777 mRNA upstream 1805 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019778 mRNA upstream 82841 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019779 mRNA upstream 136799 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019783 mRNA upstream 235821 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019782 mRNA upstream 264210 44366901 ~ 44383650 (-) True AMCG00019782
TU46276 other downstream 414250 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 709788 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1414301 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1526170 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9015250 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 793808 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2262647 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3789512 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4419977 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6608057 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000140_00114401_00148026.mRNA True 5562 mRNA 0.54 50 CI01000140 114401 ~ 148392 (+)