RNA id: AMCG00019782


Basic Information

Item Value
RNA id AMCG00019782
length 897
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00019782
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44366901 ~ 44383650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCTGCTCTGCTCCGAGCGGGACGAGCACCAGCACTGGCCTCACAGGCTTGGCTTTGTTTCATGGcgtttttttgtgttggtttttttgcAGGATGTTTCAGCAGCCGACATCAGGAAGGCCTATCGCAAGCTGTCGCTGACCTTGCACCCGGACAAGAACAAAGATGAGAATGCGGAAACTCAGTTCAGACAACTCGTCGCCATCTATGAGGTCCTGAAAGATGAGAAAAGACGGGAGAGATATAATGACATTCTGGTCAACGGGCTGCCGGACTGGAGGCAGTCTGCCTTCTACTATCGGCGGGTCAGGAAAATGAGCAATGCTGAGCTGGGCCTCCTACTCTTCATCATTCTGACCGTAGGACATTATGCTGTCATCTGGTCAATCTACCTGGAGAAGAAACTGGATGAGCTTCTCAGTAAGAAGAAAagggagaagaggaaaaagacaaataacaaGAGTGCAGAGGACCTCAAGTCAGGAGCTCAGGACAAAAATGAGAGGTCTTCAGATCATCCCCAATGGTATGACATTTTGCCATTCAAGCTAGGCCTCTGGCTGTACTTCTCTGTGAAGTCCTTCCCCCAGTTCCTGCAGGACGTCAAGCAGTACTATGAGGActacagagagaggaagagcaaAGAGGTGGAGGAGGCGTTGGCTCAGGCGGAAGAAGAAGCAGTGCAAAAGGAAAAGAAACCCAAGGTAAAGAAGCCCAAGAGCGAGTTCCCGGTGTACGCTGCCCACTCGGGAGAATCTGTGTTTGTGCCGTCCTACGACCAGGGGGTGACCATTGAGGAAATTGAGGAGCAAATGGACGACTGGCTTGAGGATAAGAAGTCCCAGAAGAAGAAGGTAACCTGGAActctttaaaatctttaaaattataa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K09521 DNAJC1; DnaJ homolog subfamily C member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46292 lncRNA downstream 544081 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 710457 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 810157 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 811392 43526407 ~ 43555509 (-) False G37022
TU46452 lncRNA upstream 25567 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 53270 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 340124 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 512849 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 551873 44935523 ~ 44936756 (-) True G37290
AMCG00019783 mRNA downstream 26101 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019779 mRNA downstream 124955 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019778 mRNA downstream 177745 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019777 mRNA downstream 254661 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019776 mRNA downstream 264210 44070694 ~ 44102691 (-) True AMCG00019776
AMCG00019788 mRNA upstream 134201 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019789 mRNA upstream 171531 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019801 mRNA upstream 468478 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019799 mRNA upstream 513144 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019800 mRNA upstream 635490 45019140 ~ 45033185 (-) True AMCG00019800
TU46276 other downstream 710457 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1005995 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1710508 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1822377 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9311457 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 512849 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 1981688 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3508553 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4139018 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6327098 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile