RNA id: AMCG00019789


Basic Information

Item Value
RNA id AMCG00019789
length 195
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00019789
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44555181 ~ 44557413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcaATGAACTGAGCCATGTGCAAATCCCAGTGATGCTGATGCCCGATGACTTCAAGGCCTATTCTAAGATAAAGGTTGACAACCACCTGTTCAATAAagaaaacatgccaAGCCATTTTAAGTTCAAGGAATATTGCCCGATGGTGTTCCGCAATCTCAGAGAGAGGTTTGCCATTGATGACCAGGATTTTCAG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46455 lncRNA downstream 111480 44436920 ~ 44443701 (-) True G37174
TU46452 lncRNA downstream 144922 44409217 ~ 44410259 (-) True G37171
TU46292 lncRNA downstream 732361 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 898737 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 998437 43555743 ~ 43556744 (-) True G37021
TU46528 lncRNA upstream 166361 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 339086 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 378110 44935523 ~ 44936756 (-) True G37290
TU46682 lncRNA upstream 706669 45264082 ~ 45264334 (-) True G37367
TU46735 lncRNA upstream 904801 45462214 ~ 45463311 (-) True G37413
AMCG00019788 mRNA downstream 12201 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019782 mRNA downstream 171531 44366901 ~ 44383650 (-) True AMCG00019782
AMCG00019783 mRNA downstream 214381 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019779 mRNA downstream 313235 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019778 mRNA downstream 366025 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019801 mRNA upstream 294715 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019799 mRNA upstream 339381 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019800 mRNA upstream 461727 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019802 mRNA upstream 711913 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019805 mRNA upstream 1434659 45992072 ~ 46001203 (-) True AMCG00019805
TU46276 other downstream 898737 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1194275 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1898788 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2010657 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9499737 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 339086 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 1807925 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3334790 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3965255 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6153335 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile