RNA id: TU46596


Basic Information

Item Value
RNA id TU46596
length 905
RNA type TUCP
GC content 0.37
exon number 6
gene id AMCG00019799
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44896499 ~ 44910150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAAACAATCATGGCGGAGTTGGATATTGGTAAACACTGTCAATTTGGAACTTGTAACCAGAAAGattttctaCCCTTTTTTTGTGATGGCTGCTCCCGGGTTTTCTGcCTCCATCATAAAGGAAGAGAATCACACTGTTGTTCTGAGgtatCGCTCAGAAAGGACATTTTCAAGTCTGTCAGTAACACTTCCTATTTGTGCTCTTTTCACGACTGCGATGGCAAAGAACTTTTACCAGTTGTTTGCCCATATTGCCAGAAAAACGTCTGCCTGACAGTGAAAGGATACATTTCCAAGTATTTCTGCCCAAAGGAACCAAGGACAGATGTCTGCCAATGTATTTCTGTTCTAAGTGGAGTGTGGGGAAAGTGGTGGACTTTGCCAGCTCACTGGCAAGTCtaaagaacaataacaacattttaacaGCCAAGAAACTGAGGCTGTGCCATCCTCTCTCTGGAGAAGCACTGAAAATGGAACTATCTTTGGAATCCTTGCTCTCCAACACAGAATCCCCTCTTTATAATGGGGGAGATGTCATTCTAGAATATCTTGACAATGACAGTATTGGAGTAAAATATACAAGTGCCTATCTCACTGAGTgttaacaattatattttcagattcTTATGATGTtggaaaataattcattttgtaaaatgttttctttgaatttgtattaaaacatatttcagttaataatacattcaagtCAATGTATTGGATCCTCAGTTTGTGAGTAAGGTGAGTTAATTCTAAGTTATTGATGATCCAGTTGAGAAACAAGGATGTGCACACTGCTGGAGGGTAAAGAGGCTTAATTAGAACATTGAATTTCAGACATTatcaaaattacttttaaacGTCAATTTCAagcaataaaaagtaaaattgcaAACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46528 lncRNA downstream 161105 44723774 ~ 44735394 (-) True G37232
TU46455 lncRNA downstream 452798 44436920 ~ 44443701 (-) True G37174
TU46452 lncRNA downstream 486240 44409217 ~ 44410259 (-) True G37171
TU46292 lncRNA downstream 1073679 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 1240055 43612364 ~ 43656444 (-) False AMCG00019768
TU46593 lncRNA upstream 25373 44935523 ~ 44936756 (-) True G37290
TU46682 lncRNA upstream 353932 45264082 ~ 45264334 (-) True G37367
TU46735 lncRNA upstream 552064 45462214 ~ 45463311 (-) True G37413
TU46748 lncRNA upstream 688884 45599034 ~ 45599597 (-) True G37425
TU46757 lncRNA upstream 737407 45647557 ~ 45648100 (-) True G37434
AMCG00019801 mRNA downstream 43649 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019789 mRNA downstream 339086 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019788 mRNA downstream 353519 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019782 mRNA downstream 512849 44366901 ~ 44383650 (-) True AMCG00019782
AMCG00019783 mRNA downstream 555699 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019800 mRNA upstream 108990 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019802 mRNA upstream 359176 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019805 mRNA upstream 1081922 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019806 mRNA upstream 1196133 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019808 mRNA upstream 1591697 46501847 ~ 46510145 (-) True AMCG00019808
TU46276 other downstream 1240055 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1535593 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2240106 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2351975 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9841055 35055019 ~ 35055444 (-) True G35867
TU46822 other upstream 1455188 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 2982053 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3612518 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5800598 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 6053263 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile