RNA id: AMCG00019802


Basic Information

Item Value
RNA id AMCG00019802
length 2976
RNA type mRNA
GC content 0.35
exon number 2
gene id AMCG00019802
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 45269326 ~ 45279018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAGGGGTGGGGTTCTGATTAAAACCAAATATCTGTGACGGTAGGAACTTTTCTATTCAGTGTGTGTTGCACCGGAGTCGTGTAGTGTAGGATTTCCTGTTGTTTCAGAACAATATGGTGGAGGGTTACTGGTGTTGTTATTTTATAAGactcacaaatatattttaagtttggAAAATAGGTAGTTTTAGTCTTGTGAAATGTACAGACCGGGTTTCCGACACCCCACTCCACCAGGCGGAATGGGCTCGAGACCTGGGTTGTATCGCAGTCCTGCTCCTAGATTCGATAATGGGGGAGGATTAGGAGGCATGCAGGCCGGTGTACCACCACATGCTTTTCGGGGATATTCTAATACTGCATCTCCGTCTTATTGTCACAGACCGATGCAATTTTCAGGGAAATCTCCGAATACACCGCCAAAGGAattttatagcaataataacaGCGGCGGGGTTGCAAGTGGAGGCAAGGGAAGGGTTCATAGCCCTTGTCAGACCCCGCGCAGAGGGAGCCCTAGGTATACTCCTCCATACAAACAATCTCCCTTCCGTTCTCATCAGAGCCCCGGACAGATGGGCTTTCAGGGTTCACCCAGGACATCCACACCGTTTGGTTCAGCGCATGGCAGGGAGAGAGTGGCTAATGATGTGGAAAAGTATTACAGACCGTCAATGCTTGAGGATCCCTGGGCTAGCCTACAGCCAGTTACTGTCACAGACACTAACCTGAAGTACAACACAGAGAGAACAACAAACACTGGTAGAAAAGGGAGgtatttcagttaaatatatacagatccCTTTTTAATGCAGCAAGGCAAAATAAGAAGCagcattactttgtttttttgttttgtttaatgtttttattagcgATAATGTACTGCTTCAGTGCCACAAATGAACACTTaaaatttcttaaaaaataaataaataaataaacacaaaaaacctGCTACTTTGGGCACTGGTCAAAGGGAGTAAGTATACAATATAATCCTTTATATACTGCCTTCCTTCAATAGTATTTTTCAATCACCAGCAATCAGTCTTTGACTGTTTATGCAGCAGCTCTTCCACTATCGTACCTCTCATTTACATTCATACAGGATAAAATGCCTGTTTTTTACTCGGATAACTTTTGACCCCTTAACAGGCTTTTTCAGTTGCAgaagattatgcagaaatgaAGGTCATAAATAATAACCCTATTTACAACTTTCTCTTCatttaatataaagaaataaaaatagtaatatacTTTTCCAACACTATTATGGGACATTGGTGATGTCCATATTTAGTTTTACTTATTGGACTGGATTTAAAAGTAAGAAATAACTGCTTGTAAAGTTAAGTGACTATGCCTAGTATTTGTTAGTCAGAActgctgcagcagcagctggtTGTGTATATGCtgggtttattatttataattttctttctgttaaaCTCTGGTGTTCAGACTAcactgattttaattgtattttgtaaccaTCTGACACTAGAGACTGTTAAAGGGttaaaaacgttttattttgttaccaaactgtttttgaaaatactttACTATAATGGATGTTTGTACAAGCTTGTTcgtttttacaattataaatatcaaGTGACCCTAGACAATTTTGTGACCATGTGTCACAAAAGCAGTGTAAATAACATACTTTATAGAATTGGTGTTGAAATGGTATGGTTTACAGTAggtttacaaatatttcataggtcattaaaataaattgacagtATCAACTATTCAATAATTTTTTGTAACCACCTCAGGTTTTTctaattgtgtatatattttaagagaaTTGGAAAATTTAGATTTGAATTAAATCTTATGTATTCTGTTTAACATCTCACTGGGGAAAAAGATTGTTGTAGGACACATGAATATGTATGCCATCGTAtactttgtattatatatatgatatataggTTTCTGAATGGAATCGTGTGTTGTAACCGTTTAGGATTTGTATAAAGAATGACCAAATACAAGTTTTTGGGGGTATATTCTTATTTGAGGCTTCAGACTGTTGTAGCATGTGATTCCTCGTGCTATCGTAATTTTAtccctttttttatattttgttttccttacatTATGCTGTATTACTTTGGACTGTTTGTTACCCTATCATATGCCATCAAGTTGTGATGCTTGGTAAACAATGTTTGCAAAGAGATCTGCTAGGCAACAGATATGTTGCCTTTAAACAGACCCTTTCCATGAAAGATGCTGGctacttgtattttgtttcagtaaatCGTGGACTGGGTGGGAAGGAAATACATTCCTTTTCAAGTGAACAAACTGATTAATAAAATTTCAATTATTAgttttgattactttttttatcatgtagttttaaaatgttctgattcaaatttaaaataataatgagggGGCTCTACCTGTTTTTTGCCACTGGCTCAACATACATATCTGGTGCATGATATATACttgtttaacacattatttCCTCCTAGCTATACCTGTCATTTAGTTTTTCCACAGCATTGTAAAATTTCATCTTTAGCAGCAGAATTGATAAAGGTGTTTATCATTTCACTACAgttaagatttattttggtCCACTGTATTTGCATACATTACTTACACCATGCTGTTTCATTGTTTCTAATGCACAAGTAATCAATAGTTAAttgattaacacattttatatgatGTTATAACTTCTACATACATTGAGAACTGAACAActaacagttttatttaatcataGGTTATGAATTTTGGAATAGTATACCAAAACAAATGTGCCTTTCACTTTTTCTCGCTGCGCCTCTCTAATATTCAGCTCGTCATATCACCCAAAACTGTCCTAACAGGTTTATTTACACTGTTATTCTACATTGGGAAGTTTGTTAAGGAGTAGAATTGATGGATAAGACTGAACAAACTTAAGTTTCTGAAATTCAAATATCTGTCTCCA

Function

GO: NA

KEGG:

id description
K24575 MPLKIP; M-phase-specific PLK1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46682 lncRNA downstream 4992 45264082 ~ 45264334 (-) True G37367
TU46593 lncRNA downstream 332570 44935523 ~ 44936756 (-) True G37290
TU46597 lncRNA downstream 370434 44896499 ~ 44898892 (-) True AMCG00019799
TU46528 lncRNA downstream 533932 44723774 ~ 44735394 (-) True G37232
TU46455 lncRNA downstream 825625 44436920 ~ 44443701 (-) True G37174
TU46735 lncRNA upstream 183196 45462214 ~ 45463311 (-) True G37413
TU46748 lncRNA upstream 320016 45599034 ~ 45599597 (-) True G37425
TU46757 lncRNA upstream 368539 45647557 ~ 45648100 (-) True G37434
TU46758 lncRNA upstream 369383 45648401 ~ 45648838 (-) True G37435
TU46760 lncRNA upstream 399872 45678890 ~ 45679089 (-) True G37437
AMCG00019800 mRNA downstream 236141 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019799 mRNA downstream 361826 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019801 mRNA downstream 416476 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019789 mRNA downstream 711913 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019788 mRNA downstream 726346 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019805 mRNA upstream 713054 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019806 mRNA upstream 827265 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019808 mRNA upstream 1222829 46501847 ~ 46510145 (-) True AMCG00019808
AMCG00019807 mRNA upstream 1253671 46532689 ~ 46543036 (-) True AMCG00019807
AMCG00019809 mRNA upstream 1267295 46546313 ~ 46590268 (-) True AMCG00019809
TU46596 other downstream 359176 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 1612882 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1908420 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2612933 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2724802 42544116 ~ 42544524 (-) True G36817
TU46822 other upstream 1086320 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 2613185 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3243650 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5431730 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 5684395 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile