RNA id: AMCG00019807


Basic Information

Item Value
RNA id AMCG00019807
length 1386
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00019807
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46532689 ~ 46543036 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATCTTCCAGAGTCTCTTTCCAGTCCTCCAATAGGAGTTTGGGTGTTAGAGGTGGGCTGGGTGGTATGAGTGGTCTGGGCAGTGCTGGTGGACTGGGTTTGAGTTCTGGTGGACTTGGTTTAAGTGCTGGTGGACTGGGTTTAAGCTCTGGCATGTCCCGTCTTAGCCTTGGTGGAGGTTTGGGTAGTTTACGGATGGGGGGAGTTGGCATGGGAGCAGGTGCTGCTGGGCTGGGAGCAGGGGGCTTTGGGCTTGGTGGTGGATCATCACTGGGTGGAGGTGGTCTGGGATATGGGGGTGCACTGGGAATGGGAGCTTCTGGTTTTGGCATGGGGTCTGGTGGCGGCCTTATGGTCAGTCCTGCTTTCACAATGGGCCGTACCATTGCTGCTGGGGGGCTAAGCGTAGGCTCTGCACTGGCTGCTGGCTCATCTGCTGGCAGCATCTCACCCCGGTTTTTAACCAGGGCTGCAGAGAAGCATACCTTGTCTAGCCTCAATGATCGCTTCTCCCTGTACATGGATAAAGTACGCATACTGCAGCAAGAGAATGCCAATCTGGAGGCCCAGCTCAGTCAGCTTACAGGAGGGGCTTCCATGGCACCAGACAGTACTTCCACCGTTGACTGTGAGGTTCAGTTGAAAGAGTATCGTACCACCATGGAGAACCTCACCTTGGACACCATCAAATATGAGATTGAATTGGACAACATTCGGGGTGCAGCTCATGAACTGAAAGCTAAGTATGATTTTGAGCTGGGTGTGAAATTTCAATTGGAGGCCGACGTTGCAGCTATGAAAAAGGATATAGAAACTGCTTCTGAACTTCGCATTGAACTAGATGCAAAATACCAAAGCCTTAACAACGAGCTTGACTTTCTCACCAAGACTCACGAAGAGgAGCTGGCAAGCCTGCAAAGTAAACTGGGAACCACCACCTCCGAAACATCTGTCTCCATGATCGAGGTGGACACAATGAAGTCCTTTGACATTTCAAAGGCACTGAACCAGATGAGAGCGGAGTATGATAAATCAGTCCAGCAGCACAAGGAGGAGGCAGAGGCTTACTACAAACTCAAGAATTTCTCACTTGAACAGAGTCTAGCAGAAGCACATGCACAGTCCAGTGTTGGGGTAGCAGAATACCAAGCTCAAATATCCAGCCTGGAGTCAGCCATAGAGGTTGCAAAGGGAGACCTTCACAAACAGATTCTGGCGTACCAGGAGCTGCTGGATGTGAAGTTGGCTCTAGACGTGGAGATAGCCACCTACAGGAAGTTGCTTGAGGGAGATGACTTCAAATTACCAGAGGGAGGGTCTTTCTCAGAGTCATACAGTTTTACAGTATCCGAATCTGGCATTCAGAAGAAAGAAATCCGAACA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46823 lncRNA downstream 103740 46427950 ~ 46428949 (-) True G37493
TU46818 lncRNA downstream 176973 46355083 ~ 46355716 (-) True G37490
TU46780 lncRNA downstream 551531 45980733 ~ 45981158 (-) True G37456
TU46766 lncRNA downstream 710569 45808851 ~ 45822120 (-) True G37443
TU46760 lncRNA downstream 853600 45678890 ~ 45679089 (-) True G37437
TU46881 lncRNA upstream 95154 46638190 ~ 46672792 (-) True G37539
TU46894 lncRNA upstream 185906 46728942 ~ 46730170 (-) True G37551
TU46905 lncRNA upstream 247991 46791027 ~ 46791485 (-) True G37562
TU46952 lncRNA upstream 284747 46827783 ~ 46832760 (-) True G37608
TU46954 lncRNA upstream 292672 46835708 ~ 46909572 (-) True G37610
AMCG00019808 mRNA downstream 22544 46501847 ~ 46510145 (-) True AMCG00019808
AMCG00019806 mRNA downstream 399515 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019805 mRNA downstream 531486 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019802 mRNA downstream 1253671 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019800 mRNA downstream 1499504 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019809 mRNA upstream 3277 46546313 ~ 46590268 (-) True AMCG00019809
AMCG00019813 mRNA upstream 331898 46874934 ~ 46881287 (-) True AMCG00019813
AMCG00019815 mRNA upstream 338696 46881732 ~ 46907697 (-) True AMCG00019815
AMCG00019816 mRNA upstream 379062 46922098 ~ 46933429 (-) True AMCG00019816
AMCG00019819 mRNA upstream 650527 47193563 ~ 47236854 (-) True AMCG00019819
TU46822 other downstream 139591 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 1622539 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 2876245 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 3171783 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 3876296 42644324 ~ 42656393 (-) True G36862
TU47064 other upstream 1349167 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 1979632 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 4167712 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 4420377 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile