RNA id: AMCG00019822


Basic Information

Item Value
RNA id AMCG00019822
length 1485
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00019822
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47661324 ~ 47667862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAAACTGAAATGCGTGACAAAGCTGTGTCCGAGAGACCTGGAAGATTATGGCTGCTCCTGCAGATACGAAGAGGAAGACATGCCCATTGATGCAATGGACAGCGCCTTTTTTATCCTACTCTCCAGCTGCTGCTCTCAGCACCGAAGATGCTACAAGGCTGCAGCTGAAAAAGACTGCAAACTGGAGCCTGGAAAGATTATCCTGAATTCAGCTTGTCCTGTTGGAAACATCACTTGTGGTAAAGCTTTGCAGTTTCGGAAGTACAATACATTTGCGGATGTCTCTGATCATTGTGAGGAAGTCTTCTGTCTGTGTGACAAGGCTACCATCGAATGCATGGCACGCTCACCTTACAATCCCTCCCTGAAGCACCTGCACAGCTCCTCTTGTCCGGTGACATACACAGAGACGCCAGTCACAGAACCAACTGACATATCCATAGAGGTGACGGAGGCTCGGGAAAACCTAACCACAGAGTCACCCAACGCTTCTCTGGAGTCTAACACAGAAGATCAGGACACCTCTACAGCAAGCAGGAAGCCGACTGTCACACCAGCATCGGCCCCCATTATACAGCCAGCCGACGCTCCTGTGAGGTTCGAAACCGTCAGCAGACCTACAAAAGAGCCCACTGATAGCTCCCAGGAGGAGGCTGAGAACGAAGGGCTGGACCCCCCCGTTTCAAAGGCAGTGCCATACTTTCCCCTCTCCATTCTGGGAGCTGCAGGTCTCATTGACTTTCCACTGGACCCTGAAGTGGAAGAGTGCACCAGCAACTCCTTCAACCAGTACAGCTCCACTGGGCGAGTGAGACAGGAGTTCCCTCTGCTGGGGGAGATGCTGCACTGCCTGACGGGACGCTGTCCACATGAGTTTGAGATGTATGGCTGTTACTGTGGCCAGGAAGGGAGAGGCAGACCGGTCGATGAACTGGACAGGTGCTGCTTCTTCCATCAATGCTGTTTAGAGCAAATCAGGTTGTTTGGCTGTCGGCCGGAACGGAAGCTGAATGCCCAAGTCAGCTGTGAAAATGGGCAGCCTATGTGCTTCGGGACTGGCATTTGTGAcaagctgcagtgtgtgtgtgacaaggCCAGCGTTGAATGCATGGCAGCAGCCGTCTACAATGACTCGGTCGCCACCCTGAGCAAGCAGCAGTGCAGTGGCGCCAGGGCCTCCTGCAGGCGCCGGCCCTACGGGAGTCGCCCCCCGGCACCCAGCCGCCCCCTGCCAGAGGACTCCAGTGAGGAGAGGGGTTTGCCTCAGGCAGGGAAGACCAGGCCAGCTCCAGGATTGGGGCGTCAATTTCATGTGCACCACCCCACCTTCGGCACCTCCCCCACAGTGGCTGGCACTCAGCTCACGACCGAGGACGTGGGAGAGGAGATGGGGGAGCAGGAGGACGAGACCACCCCGGCAGGTGGTTTCCCAACTGGACACACCAAACCTCATACTTTGAATGAAGACCTCACAAACTAA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47002 lncRNA downstream 360696 47300127 ~ 47300628 (-) True G37652
TU46971 lncRNA downstream 644161 47016837 ~ 47017163 (-) True G37622
TU46954 lncRNA downstream 751752 46835708 ~ 46909572 (-) True G37610
TU46952 lncRNA downstream 828564 46827783 ~ 46832760 (-) True G37608
TU46905 lncRNA downstream 869839 46791027 ~ 46791485 (-) True G37562
TU47039 lncRNA upstream 19172 47687034 ~ 47688516 (-) True G37681
TU47053 lncRNA upstream 183741 47851603 ~ 47852031 (-) True G37690
TU47086 lncRNA upstream 238197 47906059 ~ 47971592 (-) True G37716
TU47110 lncRNA upstream 431536 48099398 ~ 48099619 (-) True G37738
TU47206 lncRNA upstream 875781 48543643 ~ 48549181 (-) True G37815
AMCG00019818 mRNA downstream 380837 47245538 ~ 47280487 (-) True AMCG00019818
AMCG00019819 mRNA downstream 424470 47193563 ~ 47236854 (-) True AMCG00019819
AMCG00019816 mRNA downstream 727895 46922098 ~ 46933429 (-) True AMCG00019816
AMCG00019815 mRNA downstream 753627 46881732 ~ 46907697 (-) True AMCG00019815
AMCG00019813 mRNA downstream 780037 46874934 ~ 46881287 (-) True AMCG00019813
AMCG00019823 mRNA upstream 22503 47690365 ~ 47705884 (-) True AMCG00019823
AMCG00019828 mRNA upstream 122702 47790564 ~ 47790887 (-) True AMCG00019828
AMCG00019826 mRNA upstream 135202 47803064 ~ 47878857 (-) True AMCG00019826
AMCG00019824 mRNA upstream 224366 47892228 ~ 47901933 (-) True AMCG00019824
AMCG00019827 mRNA upstream 241685 47909547 ~ 47922255 (-) True AMCG00019827
TU46822 other downstream 1268226 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 2751174 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 4004880 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 4300418 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 5004931 42644324 ~ 42656393 (-) True G36862
TU47064 other upstream 224341 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 854806 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 3042886 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 3295551 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile