RNA id: AMCG00019826


Basic Information

Item Value
RNA id AMCG00019826
length 1020
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00019826
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47803064 ~ 47878857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCTGATTAGCGAAGATCTGATCAGGCAACGTGCAGAGCACAACAACTGCGAGATCTCCACTCTGGAGGAGGTGTCTCTTCACCAGCAGGACATCGAGAAGATCGAGCACATCGACAGGTGGTGCCGAGACCTCAAGATACTGTACCTGCAGAACAATCTTATTCCCAAAATTGGATGTGAGAGCCTGCAGAAGCTGGATTTAACAGTGAATTTTGTCGGGGAGCTGAGCACTGTAGAGTCCCTGAGAAACAACATTCACATACGGGAGCTCTTTCTGGTGGGAAACCCCTGCACAGAGTTCCAGGGATACAGGCAGTATGTGGTGGCTGCACTGCCACAGCTCAAGTGGCTGGATGGCAAAGAGATTGTTCGTTCAGAGAGGATCCAGGCCTTACAGGGGCTGGAAGCCGTGAGGTGGAGAGTgagggagcaggaggaggcCTACCTGAGCAAGAGGGCACAGCAGCGGGAGGAGGCGCAGAgaaaactggagaaaaaaaagcagaagaaagagACTGTAGTGGCTAGGGATGGCAAGCCAGGCTTCGATGGGCGGTGGTACACCCACATTAACAACACTGTCTCTGCTGGtgaagaaaacaaggaaaatgcTGAAACGCACCCTGTGGCAGACACCAAGAATGCCTTACAAGAGGAGGATGACAAGGACTTCTGGGAGCAGCCATGTGCCTTCACACCAGAGTCCCGACTGCAGACCCACAGGCATTTAGAGGAGAAGAGACGAGCTAGGGAAGCAGAGAGGGACAAAGACAAGAAGACAAAGGCTCCGAGGACGCTAATTACGTCAGAGGGACGGGTGCTGAATGTGAACGAGCCTAGATTTCTTCTGGCGGTTCCCCAGCCACAACAAAAGAGCAAGCTTCGTATGCACACGTTTCAGCTGGTTCTTCCTGCAGAAGTGAATCCTGACAGCTCCACTGCTAAGAGGTCCCAAACCACAGGACACCTACTGGTCACCATGCCAAAGGAGGACAAAGAAACTGCCTCGCTGGGC

Function

GO: NA

KEGG:

id description
K19753 LRRC6; protein TilB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47039 lncRNA downstream 114548 47687034 ~ 47688516 (-) True G37681
TU47002 lncRNA downstream 502436 47300127 ~ 47300628 (-) True G37652
TU46971 lncRNA downstream 785901 47016837 ~ 47017163 (-) True G37622
TU46954 lncRNA downstream 893492 46835708 ~ 46909572 (-) True G37610
TU46952 lncRNA downstream 970304 46827783 ~ 46832760 (-) True G37608
TU47086 lncRNA upstream 27202 47906059 ~ 47971592 (-) True G37716
TU47110 lncRNA upstream 220541 48099398 ~ 48099619 (-) True G37738
TU47206 lncRNA upstream 664786 48543643 ~ 48549181 (-) True G37815
TU47230 lncRNA upstream 799319 48678176 ~ 48688913 (-) True G37836
TU47269 lncRNA upstream 988308 48867165 ~ 48867486 (-) True G37874
AMCG00019828 mRNA downstream 12177 47790564 ~ 47790887 (-) True AMCG00019828
AMCG00019823 mRNA downstream 97180 47690365 ~ 47705884 (-) True AMCG00019823
AMCG00019822 mRNA downstream 135202 47661324 ~ 47667862 (-) True AMCG00019822
AMCG00019818 mRNA downstream 522577 47245538 ~ 47280487 (-) True AMCG00019818
AMCG00019819 mRNA downstream 566210 47193563 ~ 47236854 (-) True AMCG00019819
AMCG00019824 mRNA upstream 13371 47892228 ~ 47901933 (-) True AMCG00019824
AMCG00019827 mRNA upstream 30690 47909547 ~ 47922255 (-) True AMCG00019827
AMCG00019825 mRNA upstream 46939 47925796 ~ 47935253 (-) True AMCG00019825
AMCG00019829 mRNA upstream 298109 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019832 mRNA upstream 311280 48190137 ~ 48219430 (-) True AMCG00019832
TU46822 other downstream 1409966 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 2892914 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 4146620 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 4442158 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 5146671 42644324 ~ 42656393 (-) True G36862
TU47064 other upstream 13346 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 643811 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 2831891 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 3084556 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile