RNA id: AMCG00019839


Basic Information

Item Value
RNA id AMCG00019839
length 4709
RNA type mRNA
GC content 0.49
exon number 28
gene id AMCG00019839
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48565610 ~ 48598978 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGATGTAGGACGGCTCGCGGTTCAGTTGTTTGGCGCCAGAGAGTGGAAGCTGCTGCTTGAAAGAGGTTCAGttccacagaaaaaaacattccttaATCCATAATTGCAACAATAAGGAATGTTTTATGGGAAGAAAACTGTACAGCTGCCTTCGTATGCACTTTTAAGGAGTATCTGAGCAGCAGTCCAGGAAAACAACATCACAAACATTTCCATCTAGCCAAATCACTAGGAAAAGTTAATAAGCAAGAGTTGATAGGCTAGTATTTTCATATCTGATGTATTATTTCGTGAATTTCTCAAGTCAATCTCTGAAGTGACAGTTTCGATAGTTGTCATTGAAAGGaaaaaCTGGCGATAGGATGTCAAAGGGCAAAGAAGTTTTCCTTGTGAAGTTTGTTCGCAACGCTGAGCAAAGATCTCGACTTGCAGCTGACGCCTACGAGGCCATCAAAGAGCTGCAGTCGGAAAAGTACTTGCAGACGATAGAAGAGGAGGAAGCACTTCTgttaaaacacaatgacaaatcTCTCTACATCTTTGATCATTTCAGTGGACCTGCATTCAGCCACTTTAAAAAGCGCTGTGTTCCTAAAGCTGAACTACCTGTATACAACATGGCTATGGCAGATGTTACCATCTCCTGTACAAGCCTGGACAAAGAGGCCAGGAGTGAAGTCAATGAACTGGTGCAGCTCATGGGAGGCCGCGTGTACAAAGACTTGAATGTGTCAGTCACCCACCTCATCGCTGGGGAGGTGGGCAGTAAGAAGTACTTGGTTGCTGCTAGCCTTGGGAAGCCTGTCCTGCTGCCCTCCTGGGTGAAGGTATGCTGGGAGAAATCCCAGGACAGTTTGTTCAGGTACACAGACTTAGTCTTGGAGGAGTACTTGTGCCCTATCTTTCGAGGCTGTACCATCTGTGTCACCGGTCTCTGTAGCCTGGACAGAAAAGAGGTTCAGAGACTTACTGTTGAGCATGGTGGACAATATACAGGCCAGTTGAAGATGAACGAGTGCACCCACCTCATTGTGCAGGAGCCCAAAGGCCAGAAGTATGAATGTGCCCAGAAATGGAATGTGTACTGTGTGTCAATCCACTGGCTGTTTGACAGCATTGAGAGAGGATTTTGCCAGGACGAGACCAAATACAAGGTTGAGCCAAGCACAGAGCAAATGAACACGCCCAGCACCTCCACACCCACAGGTATTGGAAAGAAGCAAAATGGTTCTTCTGTTTTAGGGATGAGCCTCATCTCTAACATTAGCATGAGCTCTGTCAATGACACTGCCAATACTACTGCCACAGTCAGCCGCCTGGAGCCTTTTATGGATGCCCTGGAAACTCTCGATATCGGTGCCTTCCAAGCGCCTGAGGACCTGCTTGATGGATGTAAAATATTCCTATGTGGATTTGGAGGAAAGAAGTTGGATAAGTTAAGGAGGCTCATCAACAGCGGTGCAGGATTGCGCTTCAATCAGCTCAGTGAGGACCTCACTCATATCATTATGGGGGATGAGGATGAAGATGTCAAGCAGTTTTTATCCAAGGCTTCCCACAGACCCCATGTAGTGACTGTGAAATGGTTACTGGATAGTTTCTTTGGGGGCTCCCTGGTTCCAATAGAAAAGTATTTCCATCCAGATTGCCTGCCCCCTGCTCCCCCAGCTGTGGAGCATCCTGCCCCCCAACCTACCAATGAGAAGATCCGAAAAAGCACAGGACAAAGAGCAGCCGCAGAGAGTCCAGGCCAACGGCAAAGAGCAGAGGAGGACTTGCTCTCACAGTACATCGATGAGGACCAAACAGTAGTTGAAGCAGGTAACCAGGACCGCAGTGAGACTGTATGTGAAGCAGGACCGGAAGTGGATACCTTGAGCCGCTCTTCTGCTCTAGGGGAGACCTCTACTGTGgttgaggagggagggggcCTATTTGCAGGAAAGAGGTTCCTTATCATTGGGTTCAACAAAGAAGATGAAGCCTGCCTGGTATCCTTGATTAAAGAGCATACTGGGACAGTGCTGGGGGCCCGCAGCCGAGCCGTCGCTGACTATGCAGTTGTGCCGTTGTTGGGCTGTGAGATCATGTGTATAGAACAGCAGATTGTCCTAGACCTGCACATGAATCCACTGTTCTACCCAGTGTCTGCAGTTGATGGAAGTAGTCCATTGAAGGACTGTGTGCTCTCTGTTAGCCAGTTCACTGGTGTGGAGAGAGATTCACTCGTTTATCTCGCTGAGCTTCTGGGAGCTAGTGTGCAGGAGTTCTTTGTGCGAAAAGCAAATCAACGTAAAGGTATGCTTGCCAGCACTCACCTGGTGCTGAAAGAACCCGAGGGCTCAAAGTATGAAGCTGCCAAGAAGTGGAGTCTTCCAGCTGTTACCATGCATTGGGTTCTTGAGTCTGCACGCACAGGCAAGAAAGCAGAGGAGAGTTGTTTCTTGGTGGAAAATGCAAGCTCTCCAGAAAAGGAGCAGAGTTACGTTGGCGGGTCTCAGAAGAGGGAAATGATTGAGCCCATGCGTTCTCCTGAGATCCCCTTGATTCCTCAAAACGGGGTGAAGAGTACAGTGGTCACCCCACTGGACATGAACCGCTTCCAGAGCAAGGCCTTTCAGTCAGTGCTGGCACAGCCTGTGAAGGCCCAAGGGACCCCAGGGCCAGAGGGCAGAGCAGTGACTAGGGAGCCCTTCCTCCAGCTTGACACTCCTTCCAGGTTCCTCTGCAGAGACCAGCTCTTCAGACCCTCATTCGATGTCAAGGATGCTCTGGCAGCACTAGAGACACCTGGGGGTCCTGGGCAGCAGAGCCGGAAGGTGTGCACCCCACTCTCTGAGGTCATTGGCAGGAACCTGCAGGTGGCCCTGGCCAACAGCACCCGTAACAATATGGCTGCCATCTCCGCCAGCCCCCAGTTAGGGAACCTCCAGACAGACAAGGAGGATGACTTGAAGCCCCTTGCTGGCATCGTTATCTGTGTCAGCAAGAAGCTCAGCAAGAAACAGAGTGAATTGAATGCCACTGCAGCCTCCCTAGGTGCTGACTTCAGgtgGTCATGTGATGATACAGTcacacattatatttatcagGGCCGGCAGAATGACAGCAGCAGAGAGTACAAAGCTGTCAAAGAACGAGGAGTTCACATTGTCTCAGAGCACTGGCTTCAGGCAtgtGCAGATGAGCAAAGATGGGTGTCAGAAACACTTTACCCCTTCACATACAACCCTAAAATGAGTCTTAACCTCAGCCAAGTACAAGAGCATTCACTCAGGTCACCACCTAGTGTACAGCATCACAAACAGGAAGAAAAGAAAAGAGATCTTACAGAAGCTCTGGAGATGCGGGAGACCCTGCAGCGGCAGCTCCAGGAGATCATGTCAGCCACAAAACTGGATAATTGTCCCCGCACCCCTGACAGTGTGGGGCGCTCGGCAAGGAATGGTCGCAGCAGAGCCCTAGGTGCTCTCAGGCAGTCTCGCCAGGCAATTATGGACATAAATACAGAGCCCTCACAGAATGAGCAGATCATTTGGGATGACCCTACAGCCAGAGAAGAGCGAGCCAAGTTGGCTGATAACCTGCAGTGGCCAGGAAGTCCATCCCAACAGTCCGAGCCATTGCATGTGAACAGTATCAATGGAGAGATGGAAGTTCCTTACTACAAGCAGTCCATGACAGATTCAGAGCTGGCTGAAATTGCTGCTTGTGAGGTGGAGGATGGAAATAAGCCGAAAGTCAAAGTGCAGCCAAGATTCCAGCTTTCCTCCCTCAACCCCCAAGAAAGGATTGACTACAGTCACCTGATTGAAGAGCTAGGTGGAGTGGTCCTGGACAAACAGTGCTTCGACCCGAGCTGCACGCACATCATTGTTGGACACCCGCTGAGGAATGAGAAGTACCTGGCTGCAATGGCTGCTGGCAAATGGATTCTCCACCGGTCCTACCTGGAGGCCTGTAGAGCTGTTGGCATATTTATTGAGGAGGAAGACTATGAGTGGGGCAGCAGTTCCATTCTGGACGTTCTTCCTGGCATCAGTGCTCAGCAGAGAAAGTTGGCTGTTGCTGCCTTGAGATGGCGAAGGACACTACAGAGTGAAAGGAAAAGCAACATCTGTGCAGAGGGAGCCTTCTGCGGCTGGACAGTAATACTTAATGTAGACCAATCTAGAGAGGCCGGCTTCAGACGGCTCCTGCAGTCTGGAGGAGCTAAGGTGTTGCCCAGTCATTCTTTGTCGAACTATAAGGAAGCCACTCATCTGTTTGCGGATTTTAGCAAGCTGAAACCGGATGATGCCAGGGTGAATGTTCTGGAAGCTTTTTCTCAGAAAGTCAACTGTCTCAAACCAGAATACATTGCTGACTACCTCATGCAGgAGCCAACACCTGCAATGGAGAATTACTATCTGCCTGAAGTTGTGCAATGTTTGGAGAAGGGCCTGGACTCCAGTAGGCATTCGTTATCTCGCAAACGTAAAGTCTCTGGGGATGCATCCACACTTAAGAAATCCCGGTTAAAATGACATCTTCAAAACTTAATTTTAGGGTTGCTTTTGACAGACTTTAGAGTAACCTTATGATTCGTggctgtaaagaaaaaaaaaatgttttttttttttttaatagttttcctaaaatgaaatgtaatgttttttgttgtaatatAAGTAACAATGTACTGTACACAAAATTTTGTATCgcaa

Function

GO: NA

KEGG:

id description
K10728 TOPBP1; topoisomerase (DNA) II binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47206 lncRNA downstream 16429 48543643 ~ 48549181 (-) True G37815
TU47110 lncRNA downstream 465991 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 594018 47906059 ~ 47971592 (-) True G37716
TU47053 lncRNA downstream 713579 47851603 ~ 47852031 (-) True G37690
TU47039 lncRNA downstream 877094 47687034 ~ 47688516 (-) True G37681
TU47230 lncRNA upstream 79198 48678176 ~ 48688913 (-) True G37836
TU47269 lncRNA upstream 268187 48867165 ~ 48867486 (-) True G37874
TU47340 lncRNA upstream 763325 49362303 ~ 49366167 (-) True G37942
TU47349 lncRNA upstream 878401 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 1173526 49772504 ~ 49772734 (-) True G38007
AMCG00019838 mRNA downstream 165014 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019832 mRNA downstream 346180 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019829 mRNA downstream 380673 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019825 mRNA downstream 630357 47925796 ~ 47935253 (-) True AMCG00019825
AMCG00019827 mRNA downstream 643355 47909547 ~ 47922255 (-) True AMCG00019827
AMCG00019846 mRNA upstream 587336 49186314 ~ 49198381 (-) True AMCG00019846
AMCG00019847 mRNA upstream 625920 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019850 mRNA upstream 697032 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019851 mRNA upstream 767994 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019853 mRNA upstream 942422 49541400 ~ 49584141 (-) True AMCG00019853
TU47195 other downstream 41908 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 664007 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2172512 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 3655460 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 4909166 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 2111770 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 2364435 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile