RNA id: AMCG00019846


Basic Information

Item Value
RNA id AMCG00019846
length 1629
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00019846
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49186314 ~ 49198381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGAATATTACGAGATTCTGGGAGTGCAAAGAAATTCGTCGCCAGAGGACATCAAAAAAGCCTACAGAAAACTGGCCCTGAAATGGCATCCTGACAAGAACCCAGAAAACAAGGATGAAGCAGAGAGGAGGTTTAAAGAGCTGTCCGAAGCATATGAAGTGCTCTCAGATGCCAATAAGCGGAACATCTATGACCGATATGGTAAAGAAGGCCTCAGTGCGAatggaggaggtggtggtgGTGGGCACTATCACAACAACGACAGCTTTGGATTCACATTCCGCAACCCAGAGGACGTCTTCAGGGAATTCTTTGGTGGGCGAGATCCTTTCGCAGATTTCTTTGACGATCCCTTTGATGACTTCTTTGGCAGCCGGAGGGGCCAACGCGGGGTGAGCAGGACCCGACCCGGAGGCACGTTCTTCCACGGCTTCGGTGGCTTTCCCCCATTTGGAGCTGGGTTCTCGGGATTCGACCCAGGTTTCAGCTCGTTCGGGCACATGGGCGGCGGTGGCTTCGCGTCCTTCTCCTCCAGTTCCTTCGGGGGAGGCGGGGGAGGTGGCGGTGGTGGCGGGGGCGGGATGGGCAACTTCAGGTCCGTCTCCACCTCCACCAAGTTCATCAACGGCAGGAAAATCACCACAAAGAGGATCGTGGAGAACGGGCAGGAGCGTGTCGAGATTGAGGAAGACGGACAGttaaaatccctgactgtgaaTGGTAAGGAGCAAATCCTGCGGCTGGATAACAAGTAACCCACCGGGCGCTGTCGGTATGGAAGCATAGACCTTAAACCATGTGCACGCGTCGGtcagccttttttattttcctgtttttttgttttgtttggtataCCGTAGACCGATGTAGACGACACCCCGACATGGACTCTCTCCACTCGGTTCTGTTTTTAGTTGATAGTGTGAATGGCGGCCTGTGCTGCAGGTTGCACTTACTTCATTTGGGACCATTTCTATTAGTAGGACCAGAGTTTTCTGTCTGTTCTGTTGATGTTGTTGAAGTTGTTCTTatggttttttattttattttctgtatgcaCTTTGCTGTATTGCAATTTTCCCCTTAGGTGCACATTGCCTTTGACCTGGTGTTGGGGCAGAGCAACATGTACAATTGACTGAAGCATGACTTGTGCTTTTTCATTTGATGATTGAACTGTTCAATTAGGAAACTTACTTAACCctgctttaatattaaaatgttacaactTTCTAACCTTTgtcagtaatttttttttttttttgtaaatgtcagTAGATTGTTCATAAATTAATGGTAttaatatgctttatttttttattttttttggttctgtttaaaaacataagtgTCCTCGTTCCTGCATGAATGCCAGTAATAGCTGTTCATGTTCTCAATGTGATCGTTGCTTACCTAGGCTTAAAGATCTGGATAATATACAGATGAACACACGTGGTTCGAGGGGGATTTTGTGAACTTTGTAAAACCGTTTGGaatcaataaatgtatgttgCCTCCTTTTTGGGGACGTCACGGCTTCCGAGTCTGTGTGGTGATTTGGCGTGATGGCACAGACCCCTGCTAAAGCAAGAGGCCCTTTAGGTCCATGTAAATTCATGTCTAAC

Function

GO: NA

KEGG:

id description
K09513 DNAJB7; DnaJ homolog subfamily B member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47269 lncRNA downstream 318828 48867165 ~ 48867486 (-) True G37874
TU47230 lncRNA downstream 497401 48678176 ~ 48688913 (-) True G37836
TU47206 lncRNA downstream 637133 48543643 ~ 48549181 (-) True G37815
TU47110 lncRNA downstream 1086695 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 1214722 47906059 ~ 47971592 (-) True G37716
TU47340 lncRNA upstream 163922 49362303 ~ 49366167 (-) True G37942
TU47349 lncRNA upstream 278998 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 574123 49772504 ~ 49772734 (-) True G38007
TU47421 lncRNA upstream 689548 49887929 ~ 49888191 (-) True G38016
TU47457 lncRNA upstream 1176106 50374487 ~ 50374712 (-) True G38045
AMCG00019839 mRNA downstream 587336 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019838 mRNA downstream 785718 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019832 mRNA downstream 966884 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019829 mRNA downstream 1001377 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019825 mRNA downstream 1251061 47925796 ~ 47935253 (-) True AMCG00019825
AMCG00019847 mRNA upstream 26517 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019850 mRNA upstream 97629 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019851 mRNA upstream 168591 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019853 mRNA upstream 343019 49541400 ~ 49584141 (-) True AMCG00019853
AMCG00019854 mRNA upstream 385815 49584196 ~ 49588350 (-) True AMCG00019854
TU47195 other downstream 662612 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 1284711 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2793216 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 4276164 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 5529870 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 1512367 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 1765032 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile