RNA id: AMCG00019847


Basic Information

Item Value
RNA id AMCG00019847
length 4065
RNA type mRNA
GC content 0.54
exon number 23
gene id AMCG00019847
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49224898 ~ 49268250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctagaaaagaaaaaagaaagaaaaacagaaagattgtgttattgtgttgacCGTTTCTAACCGATCACACTGGGCCGTGTTATTGCACCTGATAATCTCGCTACTCGCAGgttaCATCACGGCACTTGGCCCCTTCACCCCAACCCTTTGTGAAAAGCTCTTTAACTAAATGAAAAAGAGGCACCATGTTTAGCTTTGAAGGAGATTTCAAAACTAGGCCGAATGTGTCTCTTGGGGGAGCGAGTAAGAAGGACGAAAGGCGAAGACTGAAAAATGCCATTATTATCCAGTCCTACGTGCGAGGGTACAAGGACAGGAAACAGCAGCACGCCATTCAGAGGAGTGAGTTCGACCACTGTGCCTGCCTGGCGCAGTCGGGGGGAGGGTTTTGTCTCAGTGACGGAGCCAACCTGACGCTCCTAATATGGATGTGTCAGAACTTGGTGAAGTCCAACGGGCCATTCGTGAAGCAGCTTGCTGGGCCGGACAGACAGACCTGCGTCTTTCAGATCAAGAGGATGCTGGGCTTGTGTTGCAGGCTCCTGCAGACGTGCAAGGAAGACAGTTTAAACGTGGCGGTCCCCATGCGCATGCTGGAGATCTTTTCTTCAGAGATAACTTATTTGCCTGTTCTTCAAGATGCTAATTGTGTAGCGtctttaattgaacaaattttGCACTATATGGTACATAAAGgatACTACAGGTCGCTTTACATTTTAGTAAATCATAAGCTTCCATCGAGTCTAGAATATAGCAATGCTCCCCGCGTCCCTCTGGCCAGCACTCTCCTGGAGCACATACTCAAGCCTTTGCACTTTACCTACTCTTCTTGTGCACACGGAGCCAGACAGTACGTGTTTGCAGCCTTCACGGAGGAGTTCATCTCGGCGCCGTTCACGGAGCAGATATTCCACTTCTTCATTCCCGCGCTTTCAGACGCCCACTCCTCGTTCCCCTTTGAGCCCTTCCTCAGCTCCCTGCTGGGGACGGTCTGTGCCTCCATGGTGGCTTCTCACAAGGCCCCCTGGTTGTTCTACTTCATCCTGGCCATCGGGGAGACGAACTTAGGGGGCCTGTCCGAGGAGGGCCTGCTGCTGTATCTGCGCACACTACAGACCCTGCTGCCTCAGCTGCCCGTGTCCGTGGCCAGCGGCCGGCAGGAGGTCCTGAGTGACTCCGAGGACGAGGACGACACCAGCATCAAGACCGTGTCCAGTCAGGATGACAGCCGCATCTCGGTGCAGTTCATCACTGAAGAGTGCGTGCGCAAGCTGGACACCAAGCAGCAGACCAACGCGCTACTCAACCTGGTGTGGAGGGACTCGGCCAGCGAGGAGGTCTTCACCATGATGGCCTCCATCTGCCACACCCTCATGGTGCAGCACCGCATGATGGTGCCCAAAGTCAGACTCCTCTACAGTTTAGCGTTCAACGCTCGCTTCCTGAGGCACCTGTGGCATTTAATAACATCCATGACCACCAAGATGATTACCGGGTCCATGGTTCCCCTGCTGCAGGTGATCTCCCGCGGGTCGCCCATGTCCCTGGAAGACTCGAACCGCATCATCCCCCTCTTCTATCTCTTCAGCTCTCTGTTCAGCCACTCGCTCATCTCGGTGCACGACAGTGAGTTCTTCGGATATCCCATGGAAGGGCAGAGCCAGTCCTCCATGATGCCCTTCACCCTGGTCGAGCTGGTCACGCTGTCCCGCTGCCTGAGGGACGCCTGCCTGGGCATCATCAAGCTGGCCTACCCCGAGACCAAGCCCGAGCACCGTGAGGAGTACATCGCCGCCTTCAAGAGCGTGGGTGTCAAGACCAACACCGAGATGCAGCAGCGCATCCAGGCCGAGCAGAAGCGCTGGGTCCAGCTGTTCAAGGTCATCACTAACCTGGTGAAAATGGTGAAAGCACGGGACATTCGCAGGCCCTTCTGTCCATCTGCTCACTGGCTCTCAGGCGAGGTGAACATCAGAGCTGATAAGGTCACTCAGCTGTATGTCCCCTCAGCCCGGAACCCACCGCAGCTGTCTGTGTCCGAGGAGAGGCAGCTGGCCATCTTGACCGAGCTGCCGTTCGTCGTTCCCTTCGAAGAGCGCGTCAAGATCTTCCAGCGACTGATCTACGCGGACAAAAGAGACGTTCAGGGGGACGGCCCCTTTCTGGATGGGATCAATGTCACTATCAGACGCAACTACATCTACGAAGACGCGTACGACAAATTATCTCCCGAGAAcgAGCCAGACCTGAAGAAGCGCATCCGGGTGCACCTGCTGAACGCTCACGGGCTGGACGAAGCGGGCATCGACGGAGGCGGGATATTCAGGGAGTTTCTCAACGAGCTCCTTAAATCCGGCTTTAATCCCAACCAGGGCTTCTTCAAAACCACCAACGAGGGCCTGCTTTACCCCAGTCCCACTGCGCAGATGCTGGTCGGTGACTCTTTCACCCGACACTACTATTTCTTGGGGAGGATCTTGGGAAAGGCGCTTTATGAAAACATGCTCGTGGAGCTTCCATTCGCCAGCTTCTTCCTCTCCAAGATGCTGGGGACGAGCGCGGACGTGGACATCCACCACCTGGCATCCCTGGACCCCGAGATGTACAGAAACCTGCTGTTCCTCAAGAGCTACGAGGAAGATGTGGTTGAGCTGAAGACGGGCGGCAAGGACATCACGGTGACGACCGCCAACAGGATAGCGTACATCCACCTAGTGGCCGACTACAGGCTAAACAAACAGATCAGGCCTCACTGCCTGGCCTTCAGACAGGGCCTGGCCAACGTCGTCAACTTGGAGTGGCTGCGCATGTTCGATCAGCAGGAACTACAGGTGCTAATTTCCGGCGGCTACTCTGCCAGCCACCCCGTCATCAAGATCTTCTGGGAGGTGGTGGAAAGTTTCACGGATGAAGAGAAACGCAAGCTGCTTAGGTTCGTCACCAGCTGCTCGCGGCCCCCGCTGCTGGGGTTCAAGGAGCTGTACCCGGCCTTCTGCATCCACAACGGAGGGAACGACCTGGAGCGCCTGCCCACCGCCAGCACCTGCATGAACCTGCTGAAGCTGCCGGAGTTCTGTGACGAGAGCCTGATGAGGAACAAGCTCCTCTATGCCATCGAGTCTTCGGCCGGGTTCGAGCTGAGCTGAGAGCCGAGAGCCCCTCGCCCGCGCCTCGCCTGCGCCTCGCCCCCGCGGCAGCGCACCCCGAGTGCTGGGTCCGAGAGCCTCGCTGCCTCGGAGAGACAAAACCGACCAACgagcaaaaatacaaacacacatgaaatCCATTTAGGCAAACCTACAACAATTATTACAGGGATCGCAAGTAAGGGTCGATGCACTGAGAACGTATTCAGttttaagttgttttgttttgttttttaatgacctTACTTGGGTTTAATAAGGACAACGACGACAACGACATCTACGCTGCTTTTTTCTGTAGTTCATTAAAAGAACCAGACGCTGTTTTGGGCTTTGGCTGACAACTGTGTTtttagagaaaagaaaagaaagaaaatgccaaGTGAAGCGCAGTCTGAAACGGACGAGTATTCACCAAAGATTCCGCTCTGGCTGCGCGACTCCAGGGTGAGTGATGAGGTCACGGGTGTCGAGATGCGTCCGTGATCCTGTGGAGACGGCACTCGGGCCTGAGGAGGGAGACGCCGGACCTGCAGGGTGTATCGCAGGGATCTGAAGGTAACGCCAGACTGTTAAAGCGAACGACTGATTTTACAAAACTGGAAGTCACAGAGAATCTTCTAGTTGTGCGACGAATATAACGgggatttctgtgttttgttttttacattaacaTGATATGATAAACGCACCGGTTTTGGCTTGCCtgtagtgttatttttatttggcacTGGTTGGAGTCTGGCGGGGGAGttgtgaatatgtgtgtgtgtacactgttCTTTTGCTGTCCCTCACTCGGTCACCTGTACagctcttttctttcttttttccctttcttttttcacGTGTATTGGAATCCCCTGGGATACAGCTTCAACTTGTGTTCCCCCACTTATTAAAGTGAACAATCAGT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10589 UBE3C; ubiquitin-protein ligase E3 C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47269 lncRNA downstream 357412 48867165 ~ 48867486 (-) True G37874
TU47230 lncRNA downstream 535985 48678176 ~ 48688913 (-) True G37836
TU47206 lncRNA downstream 675717 48543643 ~ 48549181 (-) True G37815
TU47110 lncRNA downstream 1125279 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 1253306 47906059 ~ 47971592 (-) True G37716
TU47340 lncRNA upstream 94053 49362303 ~ 49366167 (-) True G37942
TU47349 lncRNA upstream 209129 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 504254 49772504 ~ 49772734 (-) True G38007
TU47421 lncRNA upstream 619679 49887929 ~ 49888191 (-) True G38016
TU47457 lncRNA upstream 1106237 50374487 ~ 50374712 (-) True G38045
AMCG00019846 mRNA downstream 26517 49186314 ~ 49198381 (-) True AMCG00019846
AMCG00019839 mRNA downstream 625920 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019838 mRNA downstream 824302 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019832 mRNA downstream 1005468 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019829 mRNA downstream 1039961 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019850 mRNA upstream 27760 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019851 mRNA upstream 98722 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019853 mRNA upstream 273150 49541400 ~ 49584141 (-) True AMCG00019853
AMCG00019854 mRNA upstream 315946 49584196 ~ 49588350 (-) True AMCG00019854
AMCG00019856 mRNA upstream 380670 49648920 ~ 49652027 (-) True AMCG00019856
TU47195 other downstream 701196 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 1323295 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2831800 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 4314748 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 5568454 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 1442498 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 1695163 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile