RNA id: AMCG00019850


Basic Information

Item Value
RNA id AMCG00019850
length 2469
RNA type mRNA
GC content 0.61
exon number 11
gene id AMCG00019850
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49296010 ~ 49306938 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGAAGACCTCAAGGAAAGCGAAAACTGAAAGGAGACTTCGGCAAACTGCAGAAGTTCAAAACCTCCGTGCAGGAATTCGTCAAAAGGAGATCGGCGAGCGCTGAAGCCGAGGACGACAGCCCTGGGGACACGCTGCCGCACGTCAAGAGGAAAAGTCGCAAAGAGCTGCGCAAAGAGAAGCGCAagctgaagaaattaaaaatgaaaaaccatTACGAAGGCAAGCCGCACCTGAACGAAGCCCCCCACCCGACTGCCGAGGAGGCCGCGGCACACgcaaaaagcaaaatgaagaaGAACAAGGGTAAAGGCGAGGACGCTGGCGACAAGGAAGGGACAAAAAAAGACCAGGTGCGGAAAACGCCAGCAGCCCAGCCGGACGCCAAGGAGAAAAGCGACCCAGTGGGCCGGGGAGTGAAGAGGAAACGGCCCGCAGGCCGACTGGAGGAGAGCAGGAAGAAGGCGCTGCTGGAGGCCAACGTCGCGGAAGACAAGGAGATCAAGAGGCTGGAGAAATACCTGGGGCTGCACCGGCGCAAGAACAAGAAGACGCTCCCGCAGTCCTTCGCCGCCGACGGGCTGGACTACATCCTGGGGGCCCTGGACGCCTCCGCGCCCGGGCTGTACGACAGCGAGGAGGAAGCGGACCGGGCGGCGGACTGGCTGGGGGAGCTGGGCTCGGGTGTCTCggaagaggaggaagacagTGGCGAAGAAGAGCAACATCTGGATGTTAGAAGAGAGGATGAGGAAGGGGGGGAATCTGAGGAAGATTTGGAGCGGGGGGAGGACAGCGACGAGGAAGACGAGGGCGGAGAGGCAGAGGGGCCAGACGTCCCCGGGGATGGAGGGGATGCTGAGACAGGAGCCGCACAGCCTGGCAGTGCCACCGGAAAATACGTCCCCCCTGCCCTGAGGGAGTCCGTGGATTCGACCCGCAGAGCCCAGCTGGAGAGGCTGAGACGCAGCGTGAAAGGGCTGGTGAACAGGCTGAGCGAGCCCAACATGGCGTCCATCAGCGGGCAGCTGGAGCAGCTGTACATGAGCCACAGCCGGAAGGACATGAGCGACACCCTGACTGACGTGCTGCTGTCCGCCTGCGTGTCTCCGGCCCTGATGGCTGACCGCCTCCTGCTGGAGCACGTGCTGCTGGTCAGCGTGCTGCATCACACCGTGGGGCTGGAGGTGGGGGCGCAGTTCCTGGAGACGGTGGTGCGCCGGTTCGAGGAGCTGTACCAGGCCGGCTGCGAGGGCAAGGAGTGTGACAACCTGCTGGCCATCATCGCCCACCTCTACAACTTTCACGTGGTGCACGCGCTGCTCATCTTCGACCTGCTCCGGAAGCTCACCTCCGCCTTCGCCGAGAAGGACATCGAGCTCGTGCTGCTGCTCCTCAGGAACGTGGGCTTCGCGCTGCGCAAGGACGACGCGCTCGCCCTCAAGGAGCTGATCTCCGAGGCCCAGCGCAAGGCCAGTGCCCTGGGAGCGCAGTTTCAGGACCAGAACCGGGTGCGCTTCATGCTGGAGACCATGCTGGCGCTGAAGAACAACGACATGAGGAAGATCCCAGGCTACGACCCCGAGCCCGTGGAGAGGCTGCGCAAGCTGCAGCGGACCCTGATCCACCATAGTACGGCAGGCAGTGATGTGTGTCTGCGCGTGTCTCTGGACAACCTGCTGGCGGCCGACCAGGTGGGGCGCTGGTGGATTGTGGGCTCGTCCTGGGCTGGGGCTCCCATGATCCACAGCTCCACCAGCAAGACCCTGCCATCGCAGCCAGGAGGCCAGTTTAGCTCAAAGGTTTTGGATCTAGCCCGGAAGCAGAGGATGAACACTGACATCCGCAGGAATATCTTCTGTGTGCTGATGACCTGTGAGGACTACTTGGATGCTTTTGAAAAGCTCTTGAGgcTGGGCCTGAAGGatcagcaggagagagagattgtgcgTGTGCTCATGGACTGCTGCCTGCAGGAGAAGACCTTCAACACCTTCTATGCTGTCTTGGGGGAGAAGTTCTGTTCTTATGACCGCCGCTTCCAGATGACCTTTCAGTTCAGCATGTGGGACAAGTTTCGGGATCTGCCCAGCCTGTCCAAAAGCACCGTGGCTAACCTAGTCCCCCTCCTGGTGCACCTGCTGAAGAAGAAGGCCCTGTCTCTCTCCGTGCTCAAGGCGATCGAGTTCAGCGAGTTGGACAGGCACAGCGTGAGCTTTCTGCGCCGGGTGCTGGGTAAACTGCTGACTGAGTCGGAGCCGGAGGAGCTCGTGGACATCTTTGGCAGGATTTCGGGCGTTCCTAAGCTGGCGATGCTGCGTGAAGGCCTGAAGCTCTTCATCAGCCACTTCCTCCTGAAGGGCGCCCAGAGCCTGGCCCCCGGGGAGCCGCCCGGCCTGCTGAAGGAGAGGGCCGACCTGGTGACCAAAGCCATTGAGGCCAGAGACTCCAAGCTCAAGCTGTGA

Function

GO: NA

KEGG:

id description
K17583 NOM1; nucleolar MIF4G domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47269 lncRNA downstream 428524 48867165 ~ 48867486 (-) True G37874
TU47230 lncRNA downstream 607097 48678176 ~ 48688913 (-) True G37836
TU47206 lncRNA downstream 746829 48543643 ~ 48549181 (-) True G37815
TU47110 lncRNA downstream 1196391 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 1324418 47906059 ~ 47971592 (-) True G37716
TU47340 lncRNA upstream 55365 49362303 ~ 49366167 (-) True G37942
TU47349 lncRNA upstream 170441 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 465566 49772504 ~ 49772734 (-) True G38007
TU47421 lncRNA upstream 580991 49887929 ~ 49888191 (-) True G38016
TU47457 lncRNA upstream 1067549 50374487 ~ 50374712 (-) True G38045
AMCG00019847 mRNA downstream 27760 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019846 mRNA downstream 97629 49186314 ~ 49198381 (-) True AMCG00019846
AMCG00019839 mRNA downstream 697032 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019838 mRNA downstream 895414 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019832 mRNA downstream 1076580 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019851 mRNA upstream 60034 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019853 mRNA upstream 234462 49541400 ~ 49584141 (-) True AMCG00019853
AMCG00019854 mRNA upstream 277258 49584196 ~ 49588350 (-) True AMCG00019854
AMCG00019856 mRNA upstream 341982 49648920 ~ 49652027 (-) True AMCG00019856
AMCG00019857 mRNA upstream 392300 49699238 ~ 49707383 (-) True AMCG00019857
TU47195 other downstream 772308 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 1394407 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2902912 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 4385860 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 5639566 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 1403810 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 1656475 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile