RNA id: AMCG00019856


Basic Information

Item Value
RNA id AMCG00019856
length 516
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00019856
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49648920 ~ 49652027 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGAACGAGCCCAGGCACAGGGAGCCGGACCGCCAGGAGTCGGGGGACGAGTCCAACAGGGCCATCATCCCTCTCCTCCAGGCTCCGGGGAACCTGCAGCTCCCGCACCGCATCACCAACTTCTTCATCGACAACATCTTGCGGCCGGACTTCGGCCGGAGGAAAGAGGGGACCTGTGTCCGGGACCAGGGCAGCCTCCCCGGCAGGGACAGCCTGAGCCCCTCTGCCCCCGGGACGGGCCGCTCAGAGGGGACGGTCTCGGGAGAAGGGACCTCCAGCCACCCTTCTCTGAACGGGGCCAAGAAGGCGGACATTGCCCCCGACGAGCCCCTGCGAGCCCGGGGAGGGGAGAGTGGCGACCAGTGCCTGAGCTCCGACTCGGATAGTTCCCAGGCCAGCTCCACCACCCCGTCCCAGCCCATGCTGTGGCCCGCCTGGGTGTACTGCACCCGCTACTCGGACCGGCCGTCTTCAGCAgtagtcatcatcatcatcatcattatcgtttaa

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47349 lncRNA downstream 171336 49477379 ~ 49477584 (-) True G37950
TU47340 lncRNA downstream 282753 49362303 ~ 49366167 (-) True G37942
TU47269 lncRNA downstream 781434 48867165 ~ 48867486 (-) True G37874
TU47230 lncRNA downstream 960007 48678176 ~ 48688913 (-) True G37836
TU47206 lncRNA downstream 1099739 48543643 ~ 48549181 (-) True G37815
TU47412 lncRNA upstream 120477 49772504 ~ 49772734 (-) True G38007
TU47421 lncRNA upstream 235902 49887929 ~ 49888191 (-) True G38016
TU47457 lncRNA upstream 722460 50374487 ~ 50374712 (-) True G38045
TU47468 lncRNA upstream 834353 50486380 ~ 50489297 (-) True G38053
TU47537 lncRNA upstream 944169 50596196 ~ 50682349 (-) False AMCG00019865
AMCG00019854 mRNA downstream 60570 49584196 ~ 49588350 (-) True AMCG00019854
AMCG00019853 mRNA downstream 64779 49541400 ~ 49584141 (-) True AMCG00019853
AMCG00019851 mRNA downstream 273295 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019850 mRNA downstream 341982 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019847 mRNA downstream 380670 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019857 mRNA upstream 47211 49699238 ~ 49707383 (-) True AMCG00019857
AMCG00019859 mRNA upstream 196531 49848558 ~ 49850719 (-) True AMCG00019859
AMCG00019860 mRNA upstream 346054 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019863 mRNA upstream 693122 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019862 mRNA upstream 842075 50494102 ~ 50509867 (-) True AMCG00019862
TU47195 other downstream 1125218 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 1747317 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 3255822 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 4738770 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 5992476 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 1058721 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 1311386 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile