RNA id: AMCG00019862


Basic Information

Item Value
RNA id AMCG00019862
length 2918
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00019862
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50494102 ~ 50509867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAACAAAGCCCTCACTCCAGCCAAAACTAAGTGTGGTCACAGATCCCTAACTTCACAAATAACCAGTGAAACACAGACAAGACAAACAGCAGCCGGGCCAGAGTCCCTGATCCAAATGAGTAGTTCAGTTCAAAGCTACCAGGGGGTTCCTTCTGTTCTTCTCAcgctccacaccagcaggggaGAAAGGCAGGAGGAGCCCCCCAGCAAGTGCCCACTGGGAGAGCAGGCTGGTGGTTAGGGACGCAGTGGAACACCCCCCCCATCCTCTGGAGGCTTCAGGCCTCTCACCTCCTGACCTTAAACATGCTGATTCACACTggaggcatgttttttttattgtacaccACCACCTCATCCAGCATCTGCTCCCAGGGTGGGCGGCCCTCTGGACGGTGGGCCAGGCCGTTCTTAACCAGGTCCTGGCAATcTCAACCGCAGGCCCGGGCCGTTGCCATGGACACAGCATTCCCCGCGGGATCGGCGAACATCCGGGGATGCCTCCGCGTTCCCCTTTGACCCGGAAGCGCCCCGGCTGTCATAACGGGAGTCGCGGTGCGGGGGCTACCTGCGCTGCAGTCCCGCCGGCCCTGCGAGTCTCTGTCGGGGACACGTCTGCTCCATGCTGGCCTAGGCCTCCCGGGATCCGCGGCATGGCAGCGCCTCTACCCCCTTGCGTGATCGACTGCGGCACGGGATACACCAAGATTGGCTATGCTGGAAATACAGAGCCCCAGTTTATCATACCATCATGCATTGCGATCAGAGAGTCGGCAGGAGTGGGAGACCAGGCGCAGAGGAGGCTGATGCGTGGATTGGAAGATCTAGATTTTTTCATAGGAGATGAAGCCATTGATAAGCCCAACTATGCGACAAAGTGGCCTATCAGGCATGGCATTATAGAAGACTGGGATTTGATGGAGAGGTTCATGGAACAAGTTATATTTAAGTATCTTCGAGCGGAGCCTGAAGACCATTATTTTCTCATGACAGAGCCCCCACTGAACACCCCGGAGAACAGGGAGTACCTGGCGGAGATCATGTTCGAGTCGTTCAACGTCCCCGGCCTCTATGTGGCCGTGCAGGCCGTCCTGGCTCTGGCTGCGTCCTGGACCTCCAGGCAGGTGGGGGAGCGCACTCTCACTGGCACGGTGGTCGACAGCGGAGATGGAGTCACCCACGTCATTCCAGTGGCAGAAGGCTATGTCATCGGAAGCTGCATTAAGCACATCCCTATCGCGGGAAGGGACATCACGTATTTCATACAGCAGCTCCTGAGAGACCGGGAGATGGGCATCCCTCCGGAGCAGTCCCTGGAAACGGCCAAGGCCATCAAGGAAAGATACTGCTATATCTGTCCAGACATAGTGAAGGAGTTTACTAAATATGATACGGACCCTGTGAAATGGATCAAGAAGTACAAGGGTATCAACGCCATTAGCAGAGGAGAATTTCATATAGATGTTGGATATGAAAGATTCCTGGGCCCAGAAATCTTCTTTCATCCAGAGTTTGCCAATGCTGATTTTATGCAGCCCATCTCAGATGTAGTAGACGAGGTCATTCAAAATTGTCCGATCGATGTCAGGAGGCCACTATATAAGAACATCGTCCTCTCTGGCGGCTCCACAATGTTCAGAGACCTTGGCCGGCGCCTGCAGAGGGACCTAAAGAGAGTGGTGGATGCCCGGCTGAGACTGAGCGAGGAACTCAGCGGAGGCAGGATCAAGGCGAGTGTGGGTTTACGCGGCCAAAGCTTCCCCCCCCATTCTTTGccCAAACCCATTGAAGTCCAGGTCGTAACGCATCACATGCAGCGCTTTGCCGTGTGGTTTGGGGGCTCCATGCTGGCTTCCACGCCCGAGTTCTTCCAGGTGTGCCACTCCAAGAAGGACTACGAGGAATACGGACCCAGCATCTGTCGCCATAACCCCGTCTTCGGAGTCATGTCATAAGCGCGGTCCGTCACAAGTCAAGGCCCGGCGTGGAGCCAAGCTTTCCAATCCGGTAGCACATGGGCCGCACCGCTGACTGGAGCACTGGTGTTGTCGGGTAggaagagagacagatacagattaaaaaacaacaagtaGAGAAACGTAAAGTAAAGCCATAAATCGATGTTTCTGTCACTTGGTGGGCCGTGTTCATAGCAATTGTACCATCCGGCTGTGTTGACACCCCAGCAGGGCAAGAAAACGTCAAGATAAATGAACGCACAACCGTCATAGTGCTGTTTTAAGTTgccaaaagaaaattaaatgcttaattaattaGATTTGTTGCCCCCGTCTTCTAAAGAAGTGGTGGCGGATGGAACGTGCTGTTGAAGTTTTGTGAATGTGGGCCTAGGCCATGACTAGTTCTCCGGTTCTGCTGAGCAGGCTGGATTAGGACAATATCTATTTATTAGAGGTACGACAGAGGGCAGCCTAagttattgcttttaaaaacaaatatatatgaccGCAGAGTGTGACATGTTCAGAATGTacgtacagtatataaatatagacaATTCTTGCggattattttatatttcaggaTATTTTGTGTTGAGGATGATCTGATATGAAGGTGTCATGTTTAAATACAGGCATGTGAATCATTTAAATAGGCTGTATGTCATCCATTAGATTCTAACTGCTGTGCTTTACAGACAATAGAGATTGATTTGAACTGATATTAATcagatgtaataaatatatattatctatatcTCCtctaacatgtatttattattggtttCATTTATTGACCTATACTATCGGGTTATATCGCAGGGTTTTATGTTCTGACTGACGGCTAATAGCCTGAATCAGACCAGCGTTAATACAGGCTCTTCACAGCTTTTAGAGGTTTAATGCTCTTGGGTTTTTCCTAATCTGTAGGATCTCTAAATAAAGCTACAACCATA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K18584 ACTR3, ARP3; actin-related protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47468 lncRNA downstream 4805 50486380 ~ 50489297 (-) True G38053
TU47457 lncRNA downstream 119390 50374487 ~ 50374712 (-) True G38045
TU47421 lncRNA downstream 605911 49887929 ~ 49888191 (-) True G38016
TU47412 lncRNA downstream 721368 49772504 ~ 49772734 (-) True G38007
TU47349 lncRNA downstream 1016518 49477379 ~ 49477584 (-) True G37950
TU47537 lncRNA upstream 86329 50596196 ~ 50682349 (-) False AMCG00019865
TU47568 lncRNA upstream 238886 50748753 ~ 50749458 (-) True G38130
TU47573 lncRNA upstream 256930 50766797 ~ 50767409 (-) True G38135
TU47577 lncRNA upstream 275123 50784990 ~ 50786016 (-) True G38139
TU47586 lncRNA upstream 320766 50830633 ~ 50843640 (-) True G38145
AMCG00019863 mRNA downstream 142858 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019860 mRNA downstream 431978 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019859 mRNA downstream 643383 49848558 ~ 49850719 (-) True AMCG00019859
AMCG00019857 mRNA downstream 786719 49699238 ~ 49707383 (-) True AMCG00019857
AMCG00019856 mRNA downstream 842075 49648920 ~ 49652027 (-) True AMCG00019856
AMCG00019865 mRNA upstream 172462 50682329 ~ 50698163 (-) True AMCG00019865
AMCG00019866 mRNA upstream 195973 50705840 ~ 50711614 (-) False AMCG00019866
AMCG00019871 mRNA upstream 410399 50920266 ~ 50921526 (-) True AMCG00019871
AMCG00019868 mRNA upstream 417413 50927280 ~ 50943520 (-) True AMCG00019868
AMCG00019870 mRNA upstream 436005 50945872 ~ 50952372 (-) True AMCG00019870
TU47195 other downstream 1970400 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 2592499 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 4101004 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 5583952 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 6837658 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 200881 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 453546 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile