RNA id: AMCG00019865


Basic Information

Item Value
RNA id AMCG00019865
length 3072
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00019865
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50596196 ~ 50698163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGCGTGACGTGGCGCTACTTTTGCTATGGCTGTCTCTTCACATCCCTGACCTGGACACTCCTCCTCTTCATCTACTTCAACCTCAGCCGCGAGAGCCAGCCCTTCCGCCATGTGCCCGTCCAGGGGGCCCAGGCCTTCCGCAATTACCCCAGGAAGTTCCAGCCCCGCTTCACCCGAGGGCCAGCCCGCGAACCAGATCCCAAGCGACCGAATAACTGGGATCAAGAAATCCGAGACATGGGCTACCACAAACACGCCTTCAACGTCCTCATCAGCAACCGCCTGGGCTTCCACAGGGACCTGCCCGACACCAGGAACGCAAAGTGTAAGGACAAGCCGTACCCTCTGGGCCTGCCCCCGGCCAGTGTGGTGATCTGCTTCTTCAACGAGGCTTTCTCTGCCCTGCTGAGGACAGTCCACAGTGTGCTGGACCGCACCCCCCCCGTCCTGCTGCATGAGATCATTCTGGTGGACGACCACAGCGAGCTGGGCAAGCGACTCGTTCCACTAATGCCTCATCGATGTGGTTTCCAAAGCCCCTGTGCTGAATCTGCTGTCCCTCTGACAACAGATGACCTGAAGGGAGATCTGGACACCTACATCCAGGCCAACCTGCGGGGCAAAGTGAAGCTTGTCCGCAACGAGAAGCGGGAAGGCCTAATCCGAGGCAGAATGATCGGGGCCTCTCACGCCACAGGTGAGCCCTGCGGAGCGGGGTCCCCCCTGCTGGCGCCCATCCTGGAGGACCGACACACGGTGGTGTGTCCCGTCATCGACATCATCAGTGCTGACACACTGGTCTACAGCCCCTCGCCCATAGTCAGGGGCGGCTTCAACTGGGGCCTGCACTTCAAGTGGGACCCCGTGCCCCTGTCCGACCTCGGCTCTCGAGAGGGTGCCGTCGCCCCCATCAgGTCTCCAACGATGGCCGGAGGGCTCTTTGCGATGGACAGGAAGTATTTTAATGAGCTGGGCCAGTATGACAGTGGGATGGATATCTGGGGTGGGGAGAACCTGGAGATTTCCTTCAGGATCTGGATGTGTGGAGGCCGGCTGCTGATCATCCCCTGCTCGCGAGTCGGACACATTTTCCGTAAGAGGCGCCCGTACGGGTCTCCGGGAGGGCAGGACACCATGGCCCACAATTCCCTGCGCCTGGCTCACGTGTGGATGGACGAGTACAAGGAGCAGTATTTCGCCCTGCGACCTGAGCTGAGGACGAGGGACTACGGGGACATCGGCGAGCGCCTGGCCATCCGCAAGCGCCTCGGCTGCAACTCCTTCAAGTGGTACCTGGACAACATCTACCCTGAGATGCAGGTGTCGGCCGCCCACCCGAAGCCCCAGCAGGCTGTGTTTGTCAACAAGGGGGCGAAGAGGCCCAAAGTCCTGCAGCGAGGGAGGCTACGAAATCTCCTGGTCAACAAGTGCCTGGTGGCCCAGGGGCGGCCCAGCCAGAAGGGAGGGATAGTGGTGGTGAAAGACTGCAACAGCGACGACCCCGAACAGGAGTGGGCGTACGACGAGGAGCATGAGCTCATCCTGGCCGGCCTGCTGTGTCTGGACATGTCAGAGATCCGCTCCACCGACCCCCCCCGCCTCATGAAGTGCCACGGCTCCGGGGGCTCCCAGCAGTGGACACTCGGGAAGGGTAACCGTCTGTACCAGGTGTCGGTCGGGCAGTGCCTGACGGTGCTCAACCCACTCGGCCACAAAGGGTACGTTGCCATGGCAATCTGTGACGGCTCTCACTCCCAACAGTGGCAGCTGGAGGACTGAGGGTACCGAGAGAGACGGGCTTCCTGGGGCCGAGGGTCCTCCGTGCACCTCCTGCCAGCGGGAGCACAGCCCCGAGGATCTGCAGTGTTCGACTGGGAAAGCACACTTTTTTTACAGGCCGGGTCAGTGTGGAGATACTGTCCGATCTCATGGTTTTTTAAAGGGAGTGGGCTTATTCGACAGGTAGGATAGCCACAGAATTAGCCTTATAACTCAGTCTGTTATGGTGAATTGTAAtacatatactttttaaaataaccatgCGATTTTAAAACTTACTGcggtatttataatttatattggGCTTTGTTTAACCCTCTGGGCAGCATCAGGCTTTTGCTTGTGCGATGGGAACCGTCTTCACAGTGAAAGGCCAGTTTTTGCAGATGTTAACGAGCTCCACAGTATTTGCCTCCAGTATTATATTGAAGTCCCTTTTTTCCCTGGTACATTTTGACAATTACATGGATGTGAATAATTGATAAAACAAAgtttttactttgaaataaatatatatatataaatatatatatagtccagAATTATGGtcacatatacaaacattctAATTAATCAATGTCAGATCTAGATGGTTCAGTGGAGTAACTGCAGTCAAGGTTTTTCATTCGGTGAGAAGATGCATTTGTCCACCATGGCAGAATAGGACCCGGAGCAGTTTGTATTCCTCTGCAGTTCAGTAGTTGTTCTAGttagataaaataaatccattggTGCCAGTTTAGTCAAAATGAGCAGGATAGAGATACGTGTCCATATACATTGACATGGGTTTGGTCATACTTGCACACCCTTTGCATAGAATGTGAAAACTGGACATTGTTTGccaatgaataaaacatttgcaaatgaaaCCCATCGAGAACAAACCTGCCGATTAAACCCAGCCAAGCGTGCATTACACAATTGTGTAGAGCGCACATATACAACCCCCTGGCCGCAGGGTGCGTAGACTCCTCCACTCCTCGTGTGTGTATCTGCATCTGATGTTGAATGTAAGATATTGGAAAATATTCAATATACCCAGGTACTTCTTTTGTAAATGATGCAACcaaataaacaacttttaatGAACCCCAACGGTGAATCAGTTTCCTGTTGCTGGAGTGACTGCAAGCTTTACGGGTTTGCCATCACTTTCCAGACAGACAAACTATCCTCAACAGTTGAAATATGAATGTCTCGTACATGTTTTCCCCACTTTTACAATACACGCTTTAGAAAGTATATCATCGTGCTTGAAGAAAGGTCCTAAGAGACACTAGTGCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47468 lncRNA downstream 193032 50486380 ~ 50489297 (-) True G38053
TU47457 lncRNA downstream 307617 50374487 ~ 50374712 (-) True G38045
TU47421 lncRNA downstream 794138 49887929 ~ 49888191 (-) True G38016
TU47412 lncRNA downstream 909595 49772504 ~ 49772734 (-) True G38007
TU47349 lncRNA downstream 1204745 49477379 ~ 49477584 (-) True G37950
TU47568 lncRNA upstream 50590 50748753 ~ 50749458 (-) True G38130
TU47573 lncRNA upstream 68634 50766797 ~ 50767409 (-) True G38135
TU47577 lncRNA upstream 86827 50784990 ~ 50786016 (-) True G38139
TU47586 lncRNA upstream 132470 50830633 ~ 50843640 (-) True G38145
TU47593 lncRNA upstream 147814 50845977 ~ 50850167 (-) True G38152
AMCG00019862 mRNA downstream 172462 50494102 ~ 50509867 (-) True AMCG00019862
AMCG00019863 mRNA downstream 331085 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019860 mRNA downstream 620205 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019859 mRNA downstream 831610 49848558 ~ 49850719 (-) True AMCG00019859
AMCG00019857 mRNA downstream 974946 49699238 ~ 49707383 (-) True AMCG00019857
AMCG00019866 mRNA upstream 7677 50705840 ~ 50711614 (-) False AMCG00019866
AMCG00019871 mRNA upstream 222103 50920266 ~ 50921526 (-) True AMCG00019871
AMCG00019868 mRNA upstream 229117 50927280 ~ 50943520 (-) True AMCG00019868
AMCG00019870 mRNA upstream 247709 50945872 ~ 50952372 (-) True AMCG00019870
AMCG00019869 mRNA upstream 265257 50963420 ~ 50965530 (-) False AMCG00019869
TU47195 other downstream 2158627 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 2780726 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 4289231 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 5772179 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 7025885 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 12585 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 265250 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile